Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000380

Physical Location & Seq

Genomic Coordinates Reverse (-)

56215608 .. 56216863

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG429600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGAGCTCTAGAGACTATTTAGTAGTTGGTTCAAACATTCTATATTGTCATAATGTAGAGGATGGTGGCAAACTCTCAATTGGTGAAAATATGATAGATGCTGCTGGGACTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACAAGACTGCAAATCTACCTTCCAAATACATACGAGACAGTGCATTTGAACCGCAATATTGGGCTGCTCCAGGGATACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006862 GO:0008150 GO:0015215 GO:0015605 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0035352 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051724 GO:0055085 GO:0071702 GO:0071705 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

77

Amino Acids

8.5

Weight (kDa)

6.0

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09930
fragaria_vesca	FvH4_1g22620
malus_domestica	MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica	Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis	pycom15g29330
rosa_chinensis	RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata	RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora	Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa	Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha	Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana	Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	202
AgsI	TTSAA	3 cut(s)	33, 126, 199
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	6, 179
ApeKI	GCWGC	2 cut(s)	101, 214
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AsuHPI	GGTGA	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	88, 201
BccI	CCATC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	6, 179
BfaI	CTAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	2 cut(s)	102, 215
BlsI	GCNGC	2 cut(s)	103, 216
Bme1390I	CCNGG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	88, 201
BseYI	CCCAGC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	6, 179
BsmFI	GGGAC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	67
BstMAI	GTCTC	2 cut(s)	6, 179
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	88, 201
BsuI	GTATCC	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	195
CviJI	RGCY	3 cut(s)	6, 119, 214
CviKI_1	RGCY	3 cut(s)	6, 119, 214
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	8
FaiI	YATR	6 cut(s)	43, 51, 92, 181, 230, 232
FaqI	GGGAC	1 cut(s)	121
FauNDI	CATATG	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	102, 215
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	102, 215
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	2 cut(s)	102, 215
GsaI	CCCAGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	160, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	2 cut(s)	90, 206
Lsp1109I	GCAGC	2 cut(s)	88, 201
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	9
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	78
MnlI	CCTC	1 cut(s)	52
MseI	TTAA	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	221
MunI	CAATTG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeI	CATATG	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	103, 216
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	102, 215
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	2 cut(s)	8, 171
SfaNI	GCATC	1 cut(s)	88
SgeI	CNNG	4 cut(s)	21, 117, 165, 196
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	1 cut(s)	202
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	190
TasI	AATT	1 cut(s)	78
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	2 cut(s)	101, 214
TspRI	CASTG	1 cut(s)	195
XbaI	TCTAGA	1 cut(s)	8
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.