RchiOBHm_Chr2g0116721

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000380
Physical Location & Seq
Forward (+)
28983527 .. 28984576
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48974

Sequence Viewer

Length: 225 bp
ATGCAGGCAATTACAATCAGTTCATACTATTTAGAGAAGAATCTAGATGCTAGGGAAAGAGAGCTCGAGCGTGAGGCAGAGATTGAGGAGAAGGCTCCTAAAATCAAAGCCAAATCAAATATGTCTAAGGCTGAAAAGGAAGCTCGGAAGAAGCAAAAGATGCAGGCATTCCAGCAAGCAAAGGCAAAATCGAAAGGAACAAAGAACGCTAAGAGATGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

74

Amino Acids

8.64

Weight (kDa)

9.94

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 64, 143
AluI AGCT 2 cut(s) 64, 143
Alw21I GWGCWC 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 65
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 66
BccI CCATC 1 cut(s) 210
BfaI CTAG 2 cut(s) 44, 51
BmeT110I CYCGRG 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 2 cut(s) 37, 150
BseRI GAGGAG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 65
BsmI GAATGC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 160
BstC8I GCNNGC 3 cut(s) 6, 165, 177
BstDEI CTNAG 2 cut(s) 126, 210
BstMWI GCNNNNNNNGC 1 cut(s) 160
Cac8I GCNNGC 3 cut(s) 6, 165, 177
CviJI RGCY 5 cut(s) 64, 95, 110, 131, 143
CviKI_1 RGCY 5 cut(s) 64, 95, 110, 131, 143
DdeI CTNAG 2 cut(s) 126, 210
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 65
EcoICRI GAGCTC 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 66
FaiI YATR 2 cut(s) 25, 122
FriOI GRGCYC 1 cut(s) 66
FspBI CTAG 2 cut(s) 44, 51
HinfI GANTC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 4, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 126, 210
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 149, 185
LweI GCATC 2 cut(s) 37, 150
MaeI CTAG 2 cut(s) 44, 51
MboII GAAGA 2 cut(s) 49, 160
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 2 cut(s) 9, 220
MnlI CCTC 2 cut(s) 67, 79
MseI TTAA 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 96
PaeR7I CTCGAG 1 cut(s) 65
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 96
PspXI VCTCGAGB 1 cut(s) 65
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 223
SduI GDGCHC 1 cut(s) 66
SetI ASST 2 cut(s) 66, 145
SfaNI GCATC 2 cut(s) 37, 150
Sfr274I CTCGAG 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 2 cut(s) 9, 220
SspMI CTAG 2 cut(s) 44, 51
SstI GAGCTC 1 cut(s) 66
TaqI TCGA 2 cut(s) 66, 191
TasI AATT 2 cut(s) 9, 220
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 223
Tru9I TTAA 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 12
XbaI TCTAGA 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 65
XspI CTAG 2 cut(s) 44, 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.