RchiOBHm_Chr5g0080211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000380
Physical Location & Seq
Reverse (-)
86043706 .. 86046656
2951 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35454

Sequence Viewer

Length: 306 bp
ATGCTGTCTCGACTACCGCAGACGTCGACAGAGACCCAGATACAGCCAAGCACGCCTAGAAGGGTCAAATTTCCGCAACCGGAGTTTTCTCGGAGCTTCAAATCGTCGCCGGCTGCTTCTACAGCACACCATGGTGGCCGTGGGAGTCGTAAGCGGAGCAAAAAGAGGCTCTCCGGTGCGGACTTTCTTGATCTCGAAGCGGTGGTCAATTCGGATGAGGAGGAGGAGGAGGATGAGGGCGAGGACGGTACACTTTGGCTAGTGCTTCTACTAATCTCGTTTGATTTGGAATTGTGTATTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.29

Weight (kDa)

5.15

Isoelectric Point (pI)

74.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 26
AciI CCGC 5 cut(s) 17, 74, 154, 179, 200
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 68
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 250
AgsI TTSAA 1 cut(s) 100
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 12, 26
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
BbvI GCAGC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 123
BcoDI GTCTC 2 cut(s) 12, 26
BfaI CTAG 2 cut(s) 57, 260
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 130, 139
BsaWI WCCGGW 2 cut(s) 79, 173
Bse118I RCCGGY 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 130, 139
BseGI GGATG 2 cut(s) 220, 238
BseRI GAGGAG 4 cut(s) 233, 236, 239, 242
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 3 cut(s) 80, 110, 174
BsmAI GTCTC 2 cut(s) 12, 26
BsnI GGCC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 5 cut(s) 17, 74, 154, 179, 200
BspANI GGCC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 130, 139
BssMI GATC 1 cut(s) 190
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 53, 111
BstDSI CCRYGG 2 cut(s) 130, 139
BstF5I GGATG 2 cut(s) 220, 238
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 12, 26
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 52, 122
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 138
BtgI CCRYGG 2 cut(s) 130, 139
BtsCI GGATG 2 cut(s) 220, 238
Cac8I GCNNGC 2 cut(s) 53, 111
Cfr10I RCCGGY 1 cut(s) 109
Csp6I GTAC 1 cut(s) 249
CviAII CATG 1 cut(s) 131
CviJI RGCY 6 cut(s) 46, 96, 113, 138, 169, 259
CviKI_1 RGCY 6 cut(s) 46, 96, 113, 138, 169, 259
CviQI GTAC 1 cut(s) 249
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 134
FaiI YATR 1 cut(s) 132
FatI CATG 1 cut(s) 130
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 2 cut(s) 227, 245
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 2 cut(s) 57, 260
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 138
HapII CCGG 3 cut(s) 80, 110, 174
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 134
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 1 cut(s) 145
HpaII CCGG 3 cut(s) 80, 110, 174
Hpy166II GTNNAC 2 cut(s) 27, 251
Hpy188I TCNGA 2 cut(s) 93, 214
Hpy188III TCNNGA 3 cut(s) 9, 188, 194
Hpy8I GTNNAC 2 cut(s) 27, 251
Hpy99I CGWCG 2 cut(s) 28, 109
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 122
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 134
KroI GCCGGC 1 cut(s) 109
KroNI GCCGGC 1 cut(s) 111
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 93, 156
LpnPI CCDG 4 cut(s) 50, 93, 123, 187
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 2 cut(s) 57, 260
MaeII ACGT 1 cut(s) 23
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MluCI AATT 3 cut(s) 68, 208, 290
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 8 cut(s) 159, 211, 214, 217, 220, 223, 229, 235
MroNI GCCGGC 1 cut(s) 109
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 3 cut(s) 80, 110, 174
MwoI GCNNNNNNNGC 2 cut(s) 52, 122
NaeI GCCGGC 1 cut(s) 111
NcoI CCATGG 1 cut(s) 130
NdeII GATC 1 cut(s) 190
NgoMIV GCCGGC 1 cut(s) 109
NlaIII CATG 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 111
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 132
SalI GTCGAC 1 cut(s) 25
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 154
SetI ASST 2 cut(s) 26, 98
SfcI CTRYAG 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 3 cut(s) 68, 208, 290
SsiI CCGC 5 cut(s) 17, 74, 154, 179, 200
SspMI CTAG 2 cut(s) 57, 260
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 10, 26, 195
TasI AATT 3 cut(s) 68, 208, 290
TseI GCWGC 1 cut(s) 113
XapI RAATTY 1 cut(s) 68
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 26
XspI CTAG 2 cut(s) 57, 260
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.