Rroxscaffold_6G00390350

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000380
Physical Location & Seq
Forward (+)
5333396 .. 5335542
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390350.1

Sequence Viewer

Length: 420 bp
ATGACCAATGGCGACGGCATTTTTGCGCCGACGCTAACTGTGGTAGCCGTTGCAATTTTTTTTTGTAGTGTTGAGACGGTAGAAGAAGCAGTAGAGGATTGGAGACTTGATGATATAAAGGGTCTCCATGGTCGTTGTAATTTCAAAGCAGATATGCTTGATAGAAAGGTTTCCCTCTTAGGTGGTGGTGAGAAGGCATGCCTTGCCTTCTGCAAGTTCATGGTAAAGCCATCTACTCTACTAGTTCTGGATGAACCCACAAATCACTTGGACATTCCTTCAAAGGAGATGCTTGAGGAGGCAATAAATGAGTACAAAGGCACTGCTGAAAAGGAAGCTCGGAAGAAGCAAAAGATGCAGGCATTCCGGCAAGCAAAGGCAAAATCGAAAGGAATAAAGAACGCTAAGAGATGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

139

Amino Acids

15.55

Weight (kDa)

8.66

Isoelectric Point (pI)

25.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 25 - 88 6.7e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 314
AgsI TTSAA 2 cut(s) 145, 282
AhlI ACTAGT 1 cut(s) 241
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
Alw26I GTCTC 3 cut(s) 68, 97, 128
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 200
BccI CCATC 2 cut(s) 238, 405
BceAI ACGGC 2 cut(s) 31, 32
BcoDI GTCTC 3 cut(s) 68, 97, 128
BcuI ACTAGT 1 cut(s) 241
BfaI CTAG 1 cut(s) 242
BmsI GCATC 2 cut(s) 279, 345
BpuEI CTTGAG 1 cut(s) 314
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 367
BsmAI GTCTC 3 cut(s) 68, 97, 128
BsmBI CGTCTC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 362
Bso31I GGTCTC 1 cut(s) 128
Bsp19I CCATGG 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 40, 79
BstAPI GCANNNNNTGC 2 cut(s) 203, 355
BstC8I GCNNGC 3 cut(s) 199, 360, 372
BstDEI CTNAG 2 cut(s) 178, 405
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 28
BstMAI GTCTC 3 cut(s) 68, 97, 128
BstMWI GCNNNNNNNGC 2 cut(s) 203, 355
BstNSI RCATGY 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 3 cut(s) 199, 360, 372
CfoI GCGC 1 cut(s) 28
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 128, 198, 220
CviJI RGCY 3 cut(s) 47, 229, 338
CviKI_1 RGCY 3 cut(s) 47, 229, 338
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 2 cut(s) 178, 405
Eco130I CCWWGG 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 3 cut(s) 131, 201, 223
FaiI YATR 5 cut(s) 116, 129, 155, 199, 221
FatI CATG 3 cut(s) 127, 197, 219
FokI GGATG 1 cut(s) 263
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 27
HapII CCGG 1 cut(s) 367
HgaI GACGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 28
Hin1II CATG 3 cut(s) 131, 201, 223
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HpaII CCGG 1 cut(s) 367
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 1 cut(s) 248
Hpy99I CGWCG 2 cut(s) 17, 34
HpyAV CCTTC 3 cut(s) 187, 217, 288
HpyCH4III ACNGT 2 cut(s) 40, 79
HpyCH4V TGCA 3 cut(s) 53, 213, 358
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 355
HpyF3I CTNAG 2 cut(s) 178, 405
Hsp92II CATG 3 cut(s) 131, 201, 223
HspAI GCGC 1 cut(s) 26
LpnPI CCDG 3 cut(s) 233, 344, 380
LweI GCATC 2 cut(s) 279, 345
MaeI CTAG 1 cut(s) 242
MboII GAAGA 2 cut(s) 95, 355
MluCI AATT 3 cut(s) 54, 139, 415
MnlI CCTC 4 cut(s) 88, 185, 289, 292
MroXI GAANNNNTTC 1 cut(s) 169
MseI TTAA 1 cut(s) 418
MspI CCGG 1 cut(s) 367
Mva1269I GAATGC 1 cut(s) 362
MwoI GCNNNNNNNGC 2 cut(s) 203, 355
NcoI CCATGG 1 cut(s) 127
NlaIII CATG 3 cut(s) 131, 201, 223
NspI RCATGY 1 cut(s) 201
PaeI GCATGC 1 cut(s) 201
PctI GAATGC 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 169
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 418
SetI ASST 3 cut(s) 171, 184, 340
SfaNI GCATC 2 cut(s) 279, 345
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SpeI ACTAGT 1 cut(s) 241
SphI GCATGC 1 cut(s) 201
Sse9I AATT 3 cut(s) 54, 139, 415
SspMI CTAG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 40, 79
TaqI TCGA 1 cut(s) 386
TasI AATT 3 cut(s) 54, 139, 415
TatI WGTACW 1 cut(s) 312
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TscAI CASTG 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 208, 267
TspRI CASTG 1 cut(s) 328
XceI RCATGY 1 cut(s) 201
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 169
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.