RLG00000001242

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
12750818 .. 12751338
521 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001242

Sequence Viewer

Length: 315 bp
ATGGAGGTGTCAGAGAGGCTGGAGAGGGTGCAAAAGGTGTTGGAGAATGCTGTGGAGGATATGGACTTGACGGTGAGGCTTTTGGATGAGCTTGGTAAGCTTCAGAATCAGGCGCAGGAGTGTGACTTGAGTATGCTGGATGCCAACATTAGTAAGTTGATGCCGGAACTGGGGTTTGCGCCTGAGGATGAGGATAGGTGGGTGGCTTCATTTAGTAGTGGTTGGCAGATGAGGATGTCACTTGGGAAGATTTTGCTTCAGGGAGATGCTATTTCAAGTAATATTTGGTTCTTTAGCCATACGATAGATGCTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.83

Weight (kDa)

4.32

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 86, 242
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 276
AluBI AGCT 2 cut(s) 91, 100
AluI AGCT 2 cut(s) 91, 100
AspLEI GCGC 2 cut(s) 115, 181
AsuHPI GGTGA 1 cut(s) 85
AxyI CCTNAGG 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 179
BmsI GCATC 4 cut(s) 130, 150, 256, 298
BmuI ACTGGG 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 174
Bse21I CCTNAGG 1 cut(s) 183
BseGI GGATG 4 cut(s) 91, 145, 193, 240
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 174
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 170
BsmI GAATGC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 175
BsrI ACTGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 4 cut(s) 91, 145, 193, 240
BstHHI GCGC 2 cut(s) 115, 181
BstMWI GCNNNNNNNGC 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 183
BtsCI GGATG 4 cut(s) 91, 145, 193, 240
CfoI GCGC 2 cut(s) 115, 181
CviJI RGCY 6 cut(s) 19, 79, 91, 100, 206, 297
CviKI_1 RGCY 6 cut(s) 19, 79, 91, 100, 206, 297
DdeI CTNAG 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 86, 242
Eco81I CCTNAGG 1 cut(s) 183
FaiI YATR 3 cut(s) 62, 134, 300
FokI GGATG 4 cut(s) 98, 152, 200, 247
GlaI GCGC 2 cut(s) 114, 180
GsuI CTGGAG 1 cut(s) 41
HapII CCGG 1 cut(s) 164
HhaI GCGC 2 cut(s) 115, 181
Hin6I GCGC 2 cut(s) 113, 179
HinP1I GCGC 2 cut(s) 113, 179
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 164
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 13, 105
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 183
HspAI GCGC 2 cut(s) 113, 179
LpnPI CCDG 8 cut(s) 5, 95, 101, 122, 155, 177, 195, 245
LweI GCATC 4 cut(s) 130, 150, 256, 298
MaeIII GTNAC 2 cut(s) 122, 237
MboII GAAGA 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 7 cut(s) 9, 18, 49, 69, 178, 184, 225
MseI TTAA 1 cut(s) 313
MspI CCGG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 122, 237
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 313
SetI ASST 5 cut(s) 9, 39, 93, 102, 200
SfaNI GCATC 4 cut(s) 130, 150, 256, 298
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SspI AATATT 1 cut(s) 283
TaaI ACNGT 1 cut(s) 73
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TseFI GTSAC 2 cut(s) 122, 237
Tsp45I GTSAC 2 cut(s) 122, 237
TspDTI ATGAA 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.