Rmu_sc0020362.1_g000001

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020362.1
OG0000380
Physical Location & Seq
Reverse (-)
1800 .. 2637
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020362.1_g000001.1.cds

Sequence Viewer

Length: 267 bp
atgtttgtgggaataaatgagtacaaaggcactgttatcacagtttctcttgaccgatactttataaagcaaatagttaacagagtagtggaagttaaagacagaagattgcaagattatgcaggcaattacaattactatctagagaagaatctagatgctagggaaaaagagctcgagcgggaggcagagattgaggagaaggctcctaaggtcatagccaaatcaaagtgtaaatacaaggatggtacaagcttcagaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

88

Amino Acids

10.43

Weight (kDa)

8.97

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 181
AciI CCGC 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 241
AfaI GTAC 2 cut(s) 23, 250
AluBI AGCT 2 cut(s) 175, 255
AluI AGCT 2 cut(s) 175, 255
Alw21I GWGCWC 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 176
AxyI CCTNAGG 1 cut(s) 210
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BccI CCATC 1 cut(s) 239
BfaI CTAG 3 cut(s) 143, 155, 162
BmeT110I CYCGRG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 207
BmsI GCATC 1 cut(s) 148
Bse21I CCTNAGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 177
BspACI CCGC 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 207
BsrBI CCGCTC 1 cut(s) 181
Bst4CI ACNGT 2 cut(s) 34, 43
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 124
Csp6I GTAC 2 cut(s) 22, 249
CviJI RGCY 4 cut(s) 175, 206, 221, 255
CviKI_1 RGCY 4 cut(s) 175, 206, 221, 255
CviQI GTAC 2 cut(s) 22, 249
DdeI CTNAG 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 241
Eco81I CCTNAGG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 177
FaiI YATR 4 cut(s) 65, 120, 218, 265
FauI CCCGC 1 cut(s) 174
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 177
FspBI CTAG 3 cut(s) 143, 155, 162
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 253
HinfI GANTC 1 cut(s) 151
HpaI GTTAAC 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 260
Hpy188III TCNNGA 3 cut(s) 50, 143, 155
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 2 cut(s) 34, 43
HpyCH4V TGCA 2 cut(s) 112, 122
HpyF3I CTNAG 1 cut(s) 210
KspAI GTTAAC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 1 cut(s) 108
LweI GCATC 1 cut(s) 148
MaeI CTAG 3 cut(s) 143, 155, 162
MbiI CCGCTC 1 cut(s) 181
MboII GAAGA 2 cut(s) 117, 160
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 127, 133
MnlI CCTC 2 cut(s) 178, 190
MseI TTAA 2 cut(s) 78, 96
NlaIV GGNNCC 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 176
PfeI GAWTC 1 cut(s) 151
PsiI TTATAA 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 207
PspXI VCTCGAGB 1 cut(s) 176
RsaI GTAC 2 cut(s) 23, 250
RsaNI GTAC 2 cut(s) 22, 249
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 78, 96
SduI GDGCHC 1 cut(s) 177
SetI ASST 3 cut(s) 177, 216, 257
SfaNI GCATC 1 cut(s) 148
Sfr274I CTCGAG 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 127, 133
SsiI CCGC 1 cut(s) 181
SspMI CTAG 3 cut(s) 143, 155, 162
SstI GAGCTC 1 cut(s) 177
TaaI ACNGT 2 cut(s) 34, 43
TaqI TCGA 1 cut(s) 177
TaqII GACCGA 1 cut(s) 69
TasI AATT 2 cut(s) 127, 133
TatI WGTACW 1 cut(s) 21
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 2 cut(s) 78, 96
Tru9I TTAA 2 cut(s) 78, 96
TscAI CASTG 1 cut(s) 37
TspRI CASTG 1 cut(s) 37
XbaI TCTAGA 2 cut(s) 142, 154
XhoI CTCGAG 1 cut(s) 176
XspI CTAG 3 cut(s) 143, 155, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.