RchiOBHm_Chr2g0116701

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000380
Physical Location & Seq
Forward (+)
28981377 .. 28982421
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48972

Sequence Viewer

Length: 348 bp
ATGGAGGTGTCAGAGAGGCTGGAGAGGGTGCAAAAGGTGTTGGAAAGTGCTGTGGAGGATATGGACTTGATGGGGAGGCTTTTGGATGAGCTTGATAAGCTTCAGAATCGGCCGCAGGAATGTGACTTGGGTATGGTGGATGCGAAGATTAGTAAGTTGATGCCGGATCTTGGGTTTGCGCCCAAGGATGGGGACAGGTTGATGGCTTCGTTTAGTAGTGGTTGGCAGATGAGGATGTCTCATGGCAAGATTTTGCTTCAGGACCCTGATTTACTACTGCTGGATGAGCCTACAAATCACCTTGACCTTGACACAATCGAGTGGCTCGAAGATTATCTCAATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

115

Amino Acids

13.25

Weight (kDa)

4.33

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 36 - 99 5.8e-07 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 110
AcuI CTGAAG 2 cut(s) 86, 242
AfiI CCNNNNNNNGG 3 cut(s) 170, 188, 189
AluBI AGCT 2 cut(s) 91, 100
AluI AGCT 2 cut(s) 91, 100
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 174
AoxI GGCC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 1 cut(s) 262
BccI CCATC 3 cut(s) 64, 182, 196
BcoDI GTCTC 1 cut(s) 243
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 2 cut(s) 130, 150
BplI GAGNNNNNCTC 2 cut(s) 223, 255
BpmI CTGGAG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 188, 189
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 5 cut(s) 91, 145, 193, 240, 289
BseLI CCNNNNNNNGG 3 cut(s) 170, 188, 189
BseX3I CGGCCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 3 cut(s) 170, 188, 189
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 183
BstF5I GGATG 5 cut(s) 91, 145, 193, 240, 289
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 1 cut(s) 166
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 97, 286
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BstZI CGGCCG 1 cut(s) 110
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 5 cut(s) 91, 145, 193, 240, 289
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 262
CviAII CATG 1 cut(s) 242
CviJI RGCY 8 cut(s) 19, 79, 91, 100, 112, 206, 289, 325
CviKI_1 RGCY 8 cut(s) 19, 79, 91, 100, 112, 206, 289, 325
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 110
EagI CGGCCG 1 cut(s) 110
EclXI CGGCCG 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 262
Eco52I CGGCCG 1 cut(s) 110
Eco57I CTGAAG 2 cut(s) 86, 242
EcoO109I RGGNCCY 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 1 cut(s) 245
FaiI YATR 3 cut(s) 62, 134, 243
FaqI GGGAC 1 cut(s) 206
FatI CATG 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 5 cut(s) 98, 152, 200, 247, 296
Fsp4HI GCNGC 1 cut(s) 113
GlaI GCGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 112
HapII CCGG 1 cut(s) 164
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 245
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 164
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 13, 105
Hpy188III TCNNGA 1 cut(s) 260
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 286
Hsp92II CATG 1 cut(s) 245
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 7 cut(s) 5, 101, 177, 181, 245, 266, 279
LweI GCATC 2 cut(s) 130, 150
MaeIII GTNAC 1 cut(s) 122
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 2 cut(s) 157, 341
MflI RGATCY 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 5 cut(s) 9, 18, 49, 69, 225
MspI CCGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 97, 286
NdeII GATC 1 cut(s) 166
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 262
Psp5II RGGWCCY 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 262
PspPPI RGGWCCY 1 cut(s) 262
PsuI RGATCY 1 cut(s) 166
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 1 cut(s) 262
SetI ASST 7 cut(s) 9, 39, 93, 102, 200, 303, 309
SfaNI GCATC 2 cut(s) 130, 150
SinI GGWCC 1 cut(s) 262
SsiI CCGC 1 cut(s) 113
StyI CCWWGG 1 cut(s) 183
TaqI TCGA 2 cut(s) 318, 327
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 1 cut(s) 106
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.