Rmu_sc0003126.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003126.1
OG0000380
Physical Location & Seq
Reverse (-)
3527 .. 5333
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003126.1_g000001.1.cds

Sequence Viewer

Length: 354 bp
atggcacaccatggtggtcgtgggagtcgtaagcggagcaaaaagaggctctctggtgaggactttcttgatctcgaagcggtggtcaattcggatgaggaggaggaagaggaggatgagggcgaggacggttctatggtggctactttcatctgccctttggatgtcatcaagaccaggttacaggtccacggcatgcttactggtcaaggagctcaggctatgcgaaggggcaatactccggcgctggcaacttctgacgtttctgatatccctcctgacctggtaaatccaagtgcagttgaattagctttggacatcagaagagaatatgccaaaaacttgagcaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.81

Weight (kDa)

4.92

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 339
AciI CCGC 2 cut(s) 34, 80
AgsI TTSAA 1 cut(s) 305
AjnI CCWGG 2 cut(s) 176, 282
AleI CACNNNNGTG 1 cut(s) 12
AluBI AGCT 2 cut(s) 215, 311
AluI AGCT 2 cut(s) 215, 311
Alw21I GWGCWC 1 cut(s) 217
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 220, 252
Bbv12I GWGCWC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 2 cut(s) 178, 284
BfoI RGCGCY 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 339
Bme1390I CCNGG 2 cut(s) 178, 284
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 178, 284
Bpu10I CCTNAGC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 10, 190
Bse1I ACTGG 1 cut(s) 208
BseBI CCWGG 2 cut(s) 178, 284
BseDI CCNNGG 2 cut(s) 10, 190
BseGI GGATG 3 cut(s) 100, 121, 169
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 3 cut(s) 113, 116, 125
BsgI GTGCAG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 70
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 2 cut(s) 34, 80
BspCNI CTCAG 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 339
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 10, 190
BssMI GATC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 2 cut(s) 178, 284
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 2 cut(s) 102, 319
BstC8I GCNNGC 2 cut(s) 197, 249
BstDEI CTNAG 1 cut(s) 216
BstDSI CCRYGG 2 cut(s) 10, 190
BstF5I GGATG 3 cut(s) 100, 121, 169
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstNI CCWGG 2 cut(s) 178, 284
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 176, 282
BtgI CCRYGG 2 cut(s) 10, 190
BtsCI GGATG 3 cut(s) 100, 121, 169
BveI ACCTGC 1 cut(s) 339
Cac8I GCNNGC 2 cut(s) 197, 249
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 187
CsiI ACCWGGT 2 cut(s) 176, 282
CviAII CATG 2 cut(s) 11, 196
CviJI RGCY 5 cut(s) 49, 143, 215, 221, 311
CviKI_1 RGCY 5 cut(s) 49, 143, 215, 221, 311
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 102, 319
EarI CTCTTC 2 cut(s) 102, 319
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 176, 282
EcoRV GATATC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 2 cut(s) 14, 199
FaiI YATR 5 cut(s) 12, 137, 197, 224, 333
FatI CATG 2 cut(s) 10, 195
FokI GGATG 3 cut(s) 107, 128, 176
FriOI GRGCYC 1 cut(s) 217
GlaI GCGC 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 248
HapII CCGG 1 cut(s) 242
HhaI GCGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 14, 199
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 1 cut(s) 25
HpaII CCGG 1 cut(s) 242
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 4 cut(s) 94, 259, 268, 323
Hpy188III TCNNGA 4 cut(s) 68, 74, 172, 278
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 299
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 2 cut(s) 14, 199
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 36, 212
MabI ACCWGGT 2 cut(s) 176, 282
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 180
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 119, 336
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 2 cut(s) 88, 305
MlyI GAGTC 1 cut(s) 34
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 178, 284
MvaI CCWGG 2 cut(s) 178, 284
NcoI CCATGG 1 cut(s) 10
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 14, 199
NspI RCATGY 1 cut(s) 199
OliI CACNNNNGTG 1 cut(s) 12
PaeI GCATGC 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 176, 282
PspGI CCWGG 2 cut(s) 176, 282
PspPI GGNCC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 2 cut(s) 178, 284
SduI GDGCHC 1 cut(s) 217
SetI ASST 7 cut(s) 182, 189, 217, 264, 285, 313, 353
SexAI ACCWGGT 2 cut(s) 176, 282
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
SphI GCATGC 1 cut(s) 199
Sse9I AATT 2 cut(s) 88, 305
SsiI CCGC 2 cut(s) 34, 80
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 176, 282
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 88, 305
TspDTI ATGAA 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 187
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.