Rorug02G0208300

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
19517900 .. 19518400
501 bp
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UTR
Exon/CDS
Intron
Rorug02G0208300.1

Sequence Viewer

Length: 501 bp
ATGGCCATGTCAGGTCCAAGAAGAACTAAGATCGAGAAGATCGAGCATCTGAGCAGCAGGCAAGTCACCTTCTCCAAACGCCGCAAGGGGTTGTTCAACAAGGCAGAAGATTTTTCACTTCGATGTGGCGCAGATATTGCAGTAATAGTTTTCTCCAACACCAAAAAGATGTACGAGTTCTCAAGCACCAGCATGGAGCACATTCTTTCAAGATACATCAGGGAGCGTGCCGCCTGCTTTTCGATGGAGTCTCCAGAAAATAAGAGCCAAAATGAGCCGAGTTCATTATCCGATAGTTTGAGTGCAATAGGGCTACTGCAGGAAGAAATTAGAGCCCTAAACTTGGATTGCTCGAGGTTGACGGGTACGGAGTTGGATGGCATGAGTTTGAGAGAACTGAATGAGCTAGAGAAACAAATAAGGGAAGGGATCGAATCAGTTGAGAAAAGGAAGATTGAAGTGCAAAACTACTACCAGCCCTCGTATATGCCTTTATTATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

166

Amino Acids

19.05

Weight (kDa)

7.69

Isoelectric Point (pI)

80.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 13 - 60 4.4e-21 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 104 - 154 3.8e-07 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 82, 231
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 173, 367
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 3 cut(s) 97, 210, 458
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 1 cut(s) 14
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 66
BccI CCATC 2 cut(s) 238, 371
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 317
BisI GCNGC 3 cut(s) 55, 82, 231
BlsI GCNGC 3 cut(s) 56, 83, 232
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 14
BmsI GCATC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 66
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 201, 337
Bsp143I GATC 3 cut(s) 30, 39, 429
BspACI CCGC 2 cut(s) 82, 231
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 42
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 1 cut(s) 437
BssMI GATC 3 cut(s) 30, 39, 429
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 59, 228, 235
BstDEI CTNAG 2 cut(s) 27, 50
BstF5I GGATG 1 cut(s) 382
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 3 cut(s) 33, 42, 432
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 3 cut(s) 30, 39, 429
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 382
Cac8I GCNNGC 3 cut(s) 59, 228, 235
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 172, 366
CviAII CATG 3 cut(s) 7, 193, 382
CviJI RGCY 7 cut(s) 5, 267, 277, 313, 335, 406, 478
CviKI_1 RGCY 7 cut(s) 5, 267, 277, 313, 335, 406, 478
CviQI GTAC 2 cut(s) 172, 366
DdeI CTNAG 2 cut(s) 27, 50
DpnI GATC 3 cut(s) 32, 41, 431
DpnII GATC 3 cut(s) 30, 39, 429
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 337
FaeI CATG 3 cut(s) 10, 196, 385
FaiI YATR 6 cut(s) 8, 194, 383, 486, 488, 499
FatI CATG 3 cut(s) 6, 192, 381
Fnu4HI GCNGC 3 cut(s) 55, 82, 231
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 3 cut(s) 55, 82, 231
FspBI CTAG 1 cut(s) 407
GlaI GCGC 1 cut(s) 130
GluI GCNGC 3 cut(s) 55, 82, 231
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 131
Hin1II CATG 3 cut(s) 10, 196, 385
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 2 cut(s) 248, 434
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 2 cut(s) 51, 292
Hpy188III TCNNGA 3 cut(s) 34, 210, 254
Hpy8I GTNNAC 1 cut(s) 360
HpyAV CCTTC 2 cut(s) 79, 419
HpyCH4V TGCA 4 cut(s) 140, 305, 319, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 27, 50
Hsp92II CATG 3 cut(s) 10, 196, 385
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 3 cut(s) 30, 39, 429
LmnI GCTCC 2 cut(s) 196, 223
LpnPI CCDG 7 cut(s) 43, 202, 205, 247, 267, 305, 488
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 64
MalI GATC 3 cut(s) 32, 41, 431
MboI GATC 3 cut(s) 30, 39, 429
MboII GAAGA 5 cut(s) 33, 49, 119, 335, 463
MhlI GDGCHC 2 cut(s) 201, 337
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 180, 354
MnlI CCTC 2 cut(s) 348, 490
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 2 cut(s) 121, 191
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 3 cut(s) 30, 39, 429
NlaIII CATG 3 cut(s) 10, 196, 385
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 64
PaeR7I CTCGAG 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 1 cut(s) 434
PkrI GCNGC 3 cut(s) 56, 83, 232
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 14
PspXI VCTCGAGB 1 cut(s) 352
PstI CTGCAG 1 cut(s) 321
RsaI GTAC 2 cut(s) 173, 367
RsaNI GTAC 2 cut(s) 172, 366
RseI CAYNNNNRTG 2 cut(s) 121, 191
SatI GCNGC 3 cut(s) 55, 82, 231
Sau3AI GATC 3 cut(s) 30, 39, 429
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 257
SduI GDGCHC 2 cut(s) 201, 337
SetI ASST 4 cut(s) 16, 71, 359, 408
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 1 cut(s) 317
Sfr274I CTCGAG 1 cut(s) 352
SinI GGWCC 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 352
SmiMI CAYNNNNRTG 2 cut(s) 121, 191
SmlI CTYRAG 2 cut(s) 181, 352
SmoI CTYRAG 2 cut(s) 181, 352
Sse9I AATT 1 cut(s) 327
SsiI CCGC 2 cut(s) 82, 231
SspMI CTAG 1 cut(s) 407
TaqI TCGA 6 cut(s) 33, 42, 121, 242, 353, 432
TasI AATT 1 cut(s) 327
TauI GCSGC 2 cut(s) 84, 233
TfiI GAWTC 1 cut(s) 434
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 14
XhoI CTCGAG 1 cut(s) 352
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.