Rorug06G0216200

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
34513724 .. 34514006
283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0216200.1

Sequence Viewer

Length: 204 bp
ATGAAGGGCAAGCCGTACATCCAATTCTCAGTGGACTTCCCTGAAACTCTGCGCCTCGAACAGGTCAAGGCTTTGGAAGCTGCTCTTCCATCAAGGGCATCATCTCAGCAGCTGACAAGATATGGAGCTCATTCGGAGGAGGCGTATGAGGAGGACGACGACATGCCTGGTGGTGCACATAGGGCGCAATGTGAACAACAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.54

Weight (kDa)

4.8

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 61
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 80, 112, 128
AluI AGCT 3 cut(s) 80, 112, 128
Alw21I GWGCWC 2 cut(s) 130, 178
Alw44I GTGCAC 1 cut(s) 174
AlwNI CAGNNNCTG 1 cut(s) 112
ApaLI GTGCAC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 80, 109
AspLEI GCGC 2 cut(s) 54, 187
BaeGI GKGCMC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 2 cut(s) 130, 178
BbvI GCAGC 2 cut(s) 67, 121
BccI CCATC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 168
BisI GCNGC 2 cut(s) 81, 110
BlsI GCNGC 2 cut(s) 82, 111
Bme1390I CCNGG 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 42, 119
BseRI GAGGAG 2 cut(s) 152, 164
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 2 cut(s) 67, 121
BsiHKAI GWGCWC 2 cut(s) 130, 178
BslI CCNNNNNNNGG 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 130, 178
BspCNI CTCAG 2 cut(s) 41, 118
BspQI GCTCTTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 28, 105
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 18
BstHHI GCGC 2 cut(s) 54, 187
BstMWI GCNNNNNNNGC 2 cut(s) 77, 182
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 67, 121
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 11
CaiI CAGNNNCTG 1 cut(s) 112
CfoI GCGC 2 cut(s) 54, 187
Csp6I GTAC 1 cut(s) 16
CviAII CATG 1 cut(s) 163
CviJI RGCY 5 cut(s) 13, 71, 80, 112, 128
CviKI_1 RGCY 5 cut(s) 13, 71, 80, 112, 128
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 2 cut(s) 28, 105
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 128
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 130
FaeI CATG 1 cut(s) 166
FaiI YATR 4 cut(s) 123, 147, 164, 180
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 81, 110
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 2 cut(s) 81, 110
GlaI GCGC 2 cut(s) 53, 186
GluI GCNGC 2 cut(s) 81, 110
HhaI GCGC 2 cut(s) 54, 187
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 2 cut(s) 52, 185
HinP1I GCGC 2 cut(s) 52, 185
Hpy166II GTNNAC 3 cut(s) 34, 176, 194
Hpy188I TCNGA 1 cut(s) 136
Hpy8I GTNNAC 3 cut(s) 34, 176, 194
Hpy99I CGWCG 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 182
HpyF3I CTNAG 2 cut(s) 28, 105
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 2 cut(s) 52, 185
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 4 cut(s) 47, 54, 153, 180
Lsp1109I GCAGC 2 cut(s) 67, 121
LweI GCATC 1 cut(s) 107
MboII GAAGA 1 cut(s) 77
MhlI GDGCHC 2 cut(s) 130, 178
MluCI AATT 1 cut(s) 23
MnlI CCTC 5 cut(s) 65, 130, 133, 142, 145
MspA1I CMGCKG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 77, 182
NlaIII CATG 1 cut(s) 166
NspI RCATGY 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PkrI GCNGC 2 cut(s) 82, 111
Psp124BI GAGCTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SacI GAGCTC 1 cut(s) 130
SapI GCTCTTC 1 cut(s) 90
SatI GCNGC 2 cut(s) 81, 110
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 130, 178
SetI ASST 4 cut(s) 66, 82, 114, 130
SfaNI GCATC 1 cut(s) 107
Sse9I AATT 1 cut(s) 23
SstI GAGCTC 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 57
TasI AATT 1 cut(s) 23
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 80, 109
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 36
VneI GTGCAC 1 cut(s) 174
XagI CCTNNNNNAGG 1 cut(s) 59
XceI RCATGY 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.