RchiOBHm_Chr2g0137191

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000380
Physical Location & Seq
Forward (+)
54766109 .. 54766465
357 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50796

Sequence Viewer

Length: 348 bp
ATGGCGTTGGGCAAGGTGAAGGAGCTCGTCTCGTCCAATCCGGTAGTCATCTTCAGGTTCTCTCTACCTCTTCATCTTCTTCTGTGTGTCTATATATATAGAATTGTCGATCGTTTTGAACCAATTTGGAAATTTTACAATAAGATTTTGTTTCGCAGCAACAAGCTTTGTCCTCACTGTGTTTGCGTGAAGCAGCTCTTCGTTCTAAAATTGGGAGTCCAGTACAAGGCCATTGAATTGGACCAAGAGAGTCAGTACCCACTCTTCTCCTTTCAAATTCGTATACTCATTATTGTTATATATGTGTATACCGTATATCTGTACATGTATCTACTTATATATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

115

Amino Acids

13.81

Weight (kDa)

9.32

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 283, 308
AcsI RAATTY 2 cut(s) 131, 276
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 3 cut(s) 224, 257, 323
AfiI CCNNNNNNNGG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 3 cut(s) 119, 236, 275
AluBI AGCT 3 cut(s) 25, 166, 196
AluI AGCT 3 cut(s) 25, 166, 196
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 156, 193
ApoI RAATTY 2 cut(s) 131, 276
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 27
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 168, 205
BcoDI GTCTC 1 cut(s) 34
BisI GCNGC 2 cut(s) 157, 194
BlsI GCNGC 2 cut(s) 158, 195
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 2 cut(s) 168, 205
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 230
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BsnI GGCC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 203
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 1 cut(s) 220
BssMI GATC 1 cut(s) 109
BssNAI GTATAC 2 cut(s) 284, 309
Bst1107I GTATAC 2 cut(s) 284, 309
Bst4CI ACNGT 2 cut(s) 179, 313
Bst6I CTCTTC 3 cut(s) 75, 203, 269
BstAUI TGTACA 1 cut(s) 321
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 109
BstMCI CGRYCG 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 168, 205
BstXI CCANNNNNNTGG 1 cut(s) 238
BstZ17I GTATAC 2 cut(s) 284, 309
BsuRI GGCC 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 3 cut(s) 223, 256, 322
CviAII CATG 1 cut(s) 325
CviJI RGCY 4 cut(s) 25, 166, 196, 230
CviKI_1 RGCY 4 cut(s) 25, 166, 196, 230
CviQI GTAC 3 cut(s) 223, 256, 322
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 3 cut(s) 75, 203, 269
EarI CTCTTC 3 cut(s) 75, 203, 269
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 1 cut(s) 328
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 1 cut(s) 324
FblI GTMKAC 2 cut(s) 283, 308
Fnu4HI GCNGC 2 cut(s) 157, 194
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 157, 194
GluI GCNGC 2 cut(s) 157, 194
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 2 cut(s) 216, 250
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 284, 309
Hpy8I GTNNAC 2 cut(s) 284, 309
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 2 cut(s) 179, 313
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 1 cut(s) 109
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 3 cut(s) 40, 54, 233
Lsp1109I GCAGC 2 cut(s) 168, 205
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 6 cut(s) 43, 62, 68, 71, 190, 256
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 6 cut(s) 102, 123, 131, 209, 236, 276
MlyI GAGTC 2 cut(s) 225, 259
MnlI CCTC 2 cut(s) 78, 183
MspI CCGG 1 cut(s) 41
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 328
NspI RCATGY 1 cut(s) 328
PciI ACATGT 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 158, 195
Ple19I CGATCG 1 cut(s) 112
PleI GAGTC 2 cut(s) 224, 258
PpsI GAGTC 2 cut(s) 224, 258
PscI ACATGT 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 241
PvuI CGATCG 1 cut(s) 112
RsaI GTAC 3 cut(s) 224, 257, 323
RsaNI GTAC 3 cut(s) 223, 256, 322
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 203
SatI GCNGC 2 cut(s) 157, 194
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 2 cut(s) 225, 259
SduI GDGCHC 1 cut(s) 27
SetI ASST 6 cut(s) 18, 27, 59, 70, 168, 198
SinI GGWCC 1 cut(s) 241
Sse9I AATT 6 cut(s) 102, 123, 131, 209, 236, 276
SstI GAGCTC 1 cut(s) 27
TaaI ACNGT 2 cut(s) 179, 313
TaqI TCGA 1 cut(s) 108
TasI AATT 6 cut(s) 102, 123, 131, 209, 236, 276
TatI WGTACW 2 cut(s) 222, 321
TscAI CASTG 1 cut(s) 182
TseI GCWGC 2 cut(s) 156, 193
TspDTI ATGAA 1 cut(s) 62
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 2 cut(s) 131, 276
XceI RCATGY 1 cut(s) 328
XmiI GTMKAC 2 cut(s) 283, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.