Rroxscaffold_2G00089320

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000380
Physical Location & Seq
Forward (+)
11342294 .. 11366146
23853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089320.1

Sequence Viewer

Length: 465 bp
ATGGTTGGGCTTGATCTTGTAAAGGTTGTCATTACCAACCGGAATGATGACCTCATAAAGGACCGTGACGCAAGAAAGTGGCCCGACTCGAGGCGAGTTCTACAAGGTAATGTTGGATTTCACGGATCAATTTGTGTGGATGCAAAGGATGTTGTTTTAGCTGAGGATAATGAGACTGTCCTTGAGATACGGGTTGAGTATGATCGGAGAAGAAGACAAAGCCAAAGCGGGGCGGAGCTCCATTGGATACCCGCCCCTAATGGGGGGAGAATTCGGGGACAAATGGGGAATGGGGATGGGGATCCCCAATCCCCGCTATCTAAGATTGGGGATGGGGCGGGGATGATGTTGGTCGATAAATGTTGGAAAGGATTAAGACCAACGCCGGAACAAGTTTGTATCCATAGATCTATGATTCTTGTACGATCCGGTCGATTCAACCGAACCGTTGGCTTCAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

154

Amino Acids

17.2

Weight (kDa)

9.21

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 228, 233, 252, 314, 338
AclWI GGATC 4 cut(s) 133, 296, 309, 420
AcsI RAATTY 1 cut(s) 270
AfaI GTAC 1 cut(s) 423
AfiI CCNNNNNNNGG 6 cut(s) 58, 90, 229, 261, 262, 263
AgsI TTSAA 2 cut(s) 439, 457
AluBI AGCT 2 cut(s) 161, 238
AluI AGCT 2 cut(s) 161, 238
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 4 cut(s) 133, 296, 309, 420
Ama87I CYCGRG 1 cut(s) 88
AoxI GGCC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 61, 81
AvaI CYCGRG 1 cut(s) 88
AvaII GGWCC 1 cut(s) 61
BamHI GGATCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 240
BbvCI CCTCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 290, 326
BciVI GTATCC 2 cut(s) 240, 410
BcoDI GTCTC 1 cut(s) 167
BfuI GTATCC 2 cut(s) 240, 410
BglII AGATCT 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 61, 81
BmiI GGNNCC 1 cut(s) 303
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 300
BsaWI WCCGGW 2 cut(s) 39, 428
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 90, 229, 261, 262, 263
Bse8I GATNNNNATC 1 cut(s) 300
BseGI GGATG 5 cut(s) 145, 154, 301, 337, 348
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 6 cut(s) 58, 90, 229, 261, 262, 263
BseMII CTCAG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 88
BsiSI CCGG 3 cut(s) 40, 386, 429
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 6 cut(s) 58, 90, 229, 261, 262, 263
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 6 cut(s) 13, 125, 202, 301, 407, 425
BspACI CCGC 5 cut(s) 228, 233, 252, 314, 338
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 303
BspPI GGATC 4 cut(s) 133, 296, 309, 420
BssMI GATC 6 cut(s) 13, 125, 202, 301, 407, 425
Bst4CI ACNGT 3 cut(s) 65, 178, 448
BstDEI CTNAG 2 cut(s) 162, 321
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 5 cut(s) 145, 154, 301, 337, 348
BstKTI GATC 6 cut(s) 16, 128, 205, 304, 410, 428
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 6 cut(s) 13, 125, 202, 301, 407, 425
BstMCI CGRYCG 1 cut(s) 433
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 2 cut(s) 301, 407
BstYI RGATCY 2 cut(s) 301, 407
BsuI GTATCC 2 cut(s) 240, 410
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 5 cut(s) 145, 154, 301, 337, 348
Cfr13I GGNCC 2 cut(s) 61, 81
CseI GACGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 422
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviJI RGCY 6 cut(s) 10, 82, 161, 222, 238, 453
CviKI_1 RGCY 6 cut(s) 10, 82, 161, 222, 238, 453
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 2 cut(s) 162, 321
DpnI GATC 6 cut(s) 15, 127, 204, 303, 409, 427
DpnII GATC 6 cut(s) 13, 125, 202, 301, 407, 425
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 61
Eco53kI GAGCTC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 238
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 240
FaiI YATR 4 cut(s) 56, 201, 405, 413
FaqI GGGAC 1 cut(s) 291
FauI CCCGC 4 cut(s) 221, 259, 321, 331
FokI GGATG 5 cut(s) 152, 161, 308, 344, 355
FriOI GRGCYC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 82
HapII CCGG 3 cut(s) 40, 386, 429
HgaI GACGC 1 cut(s) 77
HinfI GANTC 3 cut(s) 86, 415, 435
HpaII CCGG 3 cut(s) 40, 386, 429
Hpy188I TCNGA 1 cut(s) 207
HpyCH4III ACNGT 3 cut(s) 65, 178, 448
HpyCH4V TGCA 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 162, 321
Kzo9I GATC 6 cut(s) 13, 125, 202, 301, 407, 425
LmnI GCTCC 2 cut(s) 235, 243
LpnPI CCDG 3 cut(s) 53, 399, 442
LweI GCATC 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 65
MalI GATC 6 cut(s) 15, 127, 204, 303, 409, 427
MboI GATC 6 cut(s) 13, 125, 202, 301, 407, 425
MboII GAAGA 2 cut(s) 222, 225
MflI RGATCY 2 cut(s) 301, 407
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 2 cut(s) 129, 270
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 2 cut(s) 94, 344
MnlI CCTC 3 cut(s) 62, 84, 157
MseI TTAA 1 cut(s) 374
MspI CCGG 3 cut(s) 40, 386, 429
NdeII GATC 6 cut(s) 13, 125, 202, 301, 407, 425
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 88
PcsI WCGNNNNNNNCGW 2 cut(s) 430, 439
PfeI GAWTC 2 cut(s) 415, 435
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 2 cut(s) 61, 81
PspXI VCTCGAGB 1 cut(s) 88
PsuI RGATCY 2 cut(s) 301, 407
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 374
Sau3AI GATC 6 cut(s) 13, 125, 202, 301, 407, 425
Sau96I GGNCC 2 cut(s) 61, 81
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 240
SetI ASST 5 cut(s) 27, 54, 109, 163, 240
SfaNI GCATC 1 cut(s) 130
Sfr274I CTCGAG 1 cut(s) 88
SinI GGWCC 1 cut(s) 61
SlaI CTCGAG 1 cut(s) 88
SmlI CTYRAG 2 cut(s) 88, 182
SmoI CTYRAG 2 cut(s) 88, 182
Sse9I AATT 2 cut(s) 129, 270
SsiI CCGC 5 cut(s) 228, 233, 252, 314, 338
SstI GAGCTC 1 cut(s) 240
TaaI ACNGT 3 cut(s) 65, 178, 448
TaqI TCGA 3 cut(s) 89, 354, 433
TasI AATT 2 cut(s) 129, 270
TfiI GAWTC 2 cut(s) 415, 435
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 61
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 1 cut(s) 270
XhoI CTCGAG 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.