Rmu_co8228065.1_g000001

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8228065.1
OG0000380
Physical Location & Seq
Forward (+)
1 .. 560
560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8228065.1_g000001.1.cds

Sequence Viewer

Length: 345 bp
gttctgtttagcagagcaaatctcacaattgaaagaggagagaaactggccattatcggcccaaatggatgtggcaagagtactttgctgaaactaatattgggtttacagaagccaatagcaggtgaagttctgcttggggagcataatgtcctaccaaactattttgagcaaaatcaggctgaggcacttgatttaaataaaacagtgcttgagacagtagaagaagcagcagaggattggagacttgatgatataaagggtctccttggtcgttgtaatttcaaagcagatatgcttgatagaaaggtttccctcttaagtggtggtgagaaggtaagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

114

Amino Acids

12.48

Weight (kDa)

5.18

Isoelectric Point (pI)

16.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 48
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 122
AflII CTTAAG 1 cut(s) 319
AgsI TTSAA 2 cut(s) 32, 286
AjuI GAANNNNNNNTTGG 4 cut(s) 83, 115, 120, 152
Alw26I GTCTC 3 cut(s) 209, 238, 269
AoxI GGCC 2 cut(s) 48, 58
ApeKI GCWGC 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 137, 341
BalI TGGCCA 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 242
BcoDI GTCTC 3 cut(s) 209, 238, 269
BfrI CTTAAG 1 cut(s) 319
BfuAI ACCTGC 1 cut(s) 113
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 59
BplI GAGNNNNNCTC 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 2 cut(s) 50, 60
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 3 cut(s) 209, 238, 269
BsnI GGCC 2 cut(s) 50, 60
Bso31I GGTCTC 1 cut(s) 269
BspANI GGCC 2 cut(s) 50, 60
BspCNI CTCAG 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 113
BspTI CTTAAG 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 208, 220
BstAFI CTTAAG 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 74
BstMAI GTCTC 3 cut(s) 209, 238, 269
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 242
BsuRI GGCC 2 cut(s) 50, 60
BtsCI GGATG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 81
CviJI RGCY 4 cut(s) 50, 60, 115, 182
CviKI_1 RGCY 4 cut(s) 50, 60, 115, 182
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 1 cut(s) 183
DraI TTTAAA 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaiI YATR 3 cut(s) 147, 257, 296
FalI AAGNNNNNCTT 2 cut(s) 120, 152
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 50, 60
HphI GGTGA 2 cut(s) 137, 341
Hpy166II GTNNAC 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 208, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 183
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 3 cut(s) 32, 108, 164
Lsp1109I GCAGC 1 cut(s) 242
MboII GAAGA 1 cut(s) 236
MfeI CAATTG 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 2 cut(s) 27, 280
MluNI TGGCCA 1 cut(s) 50
MnlI CCTC 4 cut(s) 29, 178, 229, 326
Mox20I TGGCCA 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 50
MseI TTAA 3 cut(s) 197, 320, 343
Msp20I TGGCCA 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 319
MunI CAATTG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 142
PaqCI CACCTGC 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 310
PkrI GCNGC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 59
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SaqAI TTAA 3 cut(s) 197, 320, 343
SatI GCNGC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 59
ScaI AGTACT 1 cut(s) 82
SetI ASST 3 cut(s) 127, 312, 339
SmiI ATTTAAAT 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 212, 319
SmoI CTYRAG 2 cut(s) 212, 319
Sse9I AATT 2 cut(s) 27, 280
SspI AATATT 1 cut(s) 99
StyI CCWWGG 1 cut(s) 268
SwaI ATTTAAAT 1 cut(s) 198
TaaI ACNGT 2 cut(s) 208, 220
TasI AATT 2 cut(s) 27, 280
TatI WGTACW 1 cut(s) 80
Tru1I TTAA 3 cut(s) 197, 320, 343
Tru9I TTAA 3 cut(s) 197, 320, 343
TscAI CASTG 1 cut(s) 213
TseI GCWGC 1 cut(s) 230
TspRI CASTG 1 cut(s) 213
Vha464I CTTAAG 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 310
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.