RLG00000019297

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
49849080 .. 49849935
856 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019297

Sequence Viewer

Length: 381 bp
ATGGAGGTGTCAGAGAGGGTGGAGAGGGTGCAAAAGGTGTTGGAGAATGCTGTGGAGGATATGGACTTGATGGTGAGGCTTTTGGATGAGCTTGGTAAGCTTCAGAATCAGGCGCAGGAGTGTGACTTGAGTATGGTGGATGCCAACATTAGTAAGTTGATGCCAGAACTTGGGTTTGCGTCTGAGGATGGGGATAGATGGGTGGCTTTATTTAGTAGTGGTTGGCAGATGAGGATGTCACTTGGGAAGATTTTGCTTCAGCACCCTGATTTACAACTGCTGGAGGAGCCTACAAATCACCTTGACCTTGACACTGTCGAGTGGCTCGAAGATTATCTCAATCAGCAGGATGTGCGCGCCAATGGTTATCATATCTCATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.53

Weight (kDa)

4.3

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 170
AccII CGCG 1 cut(s) 357
AcuI CTGAAG 2 cut(s) 86, 242
AfiI CCNNNNNNNGG 1 cut(s) 170
AluBI AGCT 2 cut(s) 91, 100
AluI AGCT 2 cut(s) 91, 100
AspLEI GCGC 3 cut(s) 115, 357, 359
AsuHPI GGTGA 2 cut(s) 85, 290
BccI CCATC 3 cut(s) 64, 182, 192
BmiI GGNNCC 1 cut(s) 288
BmsI GCATC 2 cut(s) 130, 150
BpmI CTGGAG 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseGI GGATG 5 cut(s) 91, 145, 193, 240, 355
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 174
BsePI GCGCGC 1 cut(s) 355
BseRI GAGGAG 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 170
BsmI GAATGC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 357
BspHI TCATGA 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 288
BssHII GCGCGC 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 316
BstAPI GCANNNNNTGC 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 5 cut(s) 91, 145, 193, 240, 355
BstFNI CGCG 1 cut(s) 357
BstHHI GCGC 3 cut(s) 115, 357, 359
BstMWI GCNNNNNNNGC 3 cut(s) 97, 286, 352
BstUI CGCG 1 cut(s) 357
BtsCI GGATG 5 cut(s) 91, 145, 193, 240, 355
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 357
CciI TCATGA 1 cut(s) 377
CfoI GCGC 3 cut(s) 115, 357, 359
CseI GACGC 1 cut(s) 168
CviAII CATG 1 cut(s) 378
CviJI RGCY 6 cut(s) 79, 91, 100, 206, 289, 325
CviKI_1 RGCY 6 cut(s) 79, 91, 100, 206, 289, 325
DdeI CTNAG 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 86, 242
FaeI CATG 1 cut(s) 381
FaiI YATR 4 cut(s) 62, 134, 372, 379
FatI CATG 1 cut(s) 377
FokI GGATG 5 cut(s) 98, 152, 200, 247, 362
GlaI GCGC 3 cut(s) 114, 356, 358
GsuI CTGGAG 1 cut(s) 302
HgaI GACGC 1 cut(s) 168
HhaI GCGC 3 cut(s) 115, 357, 359
Hin1II CATG 1 cut(s) 381
Hin6I GCGC 3 cut(s) 113, 355, 357
HinP1I GCGC 3 cut(s) 113, 355, 357
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 106
HphI GGTGA 2 cut(s) 85, 290
Hpy188I TCNGA 3 cut(s) 13, 105, 184
Hpy188III TCNNGA 1 cut(s) 378
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 286, 352
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 1 cut(s) 381
HspAI GCGC 3 cut(s) 113, 355, 357
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 6 cut(s) 95, 101, 177, 266, 279, 332
LweI GCATC 2 cut(s) 130, 150
MaeIII GTNAC 2 cut(s) 122, 237
MboII GAAGA 2 cut(s) 259, 341
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 7 cut(s) 9, 18, 49, 69, 178, 225, 277
Mva1269I GAATGC 1 cut(s) 52
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 97, 286, 352
NlaIII CATG 1 cut(s) 381
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 2 cut(s) 122, 237
PagI TCATGA 1 cut(s) 377
PauI GCGCGC 1 cut(s) 355
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 106
PflFI GACNNNGTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 288
PsyI GACNNNGTC 1 cut(s) 314
PteI GCGCGC 1 cut(s) 355
SetI ASST 6 cut(s) 9, 39, 93, 102, 303, 309
SfaNI GCATC 2 cut(s) 130, 150
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 2 cut(s) 318, 327
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 122, 237
Tsp45I GTSAC 2 cut(s) 122, 237
TspRI CASTG 1 cut(s) 319
Tth111I GACNNNGTC 1 cut(s) 314
Van91I CCANNNNNTGG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.