Rh2DG290100

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
33998671 .. 34003074
4404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG290100.1

Sequence Viewer

Length: 1158 bp
ATGGGTCGCGTACCTCACAACGCGCCACCCGCGACGACGCCATTAGTGACCTCAATTCCTCGTCTCCAGGTCAGAGGAAGAAGAGGGTTGCTAGCTACAAGGTGTACACTGTGGAGGGAAGCTGAAAGGGACTCTCAGGAAGAGCTATTATGGACTGCTTTTAAGGAGGAGATGCAGGTGTCAGAGAGGCTGGAGAGGGTGCAAAAGGCGTTGGAGAGTGCTGTGGAGGATATTGACTTGATGGGGAGGCTTTTGGATAAGCTTGATAAGCTTCAGAATCGGGCGCAGGAGTGTGACTTGAGTATGGTGGATGCGAAGATTAGTAAGTTCATGCCGGAACTTGGGTTTGCGCCGGAGGATGGGGACAGGTTAGTGGCTTCGTTTAGTAGTGGTTGGCAGATGAGGATGTCACTTGGGAAGATTTTGCTTCAGCACCCTGATTTACTACTGCTGGACGAGCCTACAAATCACCTTGACGTTGACACAATCGAGTGGCTCGAAGATTATCTCAATCAGCAGGATGTGCCAATGGTTATCATATGTCTTGACCGAGCTTTTCTTGATCAATTGTGTACAAAAATAGTGGAAACTGATATGGGTGTCTCCAGGACGTATGAGGGAAATTATTCTGAGTATTATATTGCAAAGGCAGCATGGATTGAAAGTCAAAATGCTGCTTGGGACAAGCAGCAGAAGGAAATTGAGCACACAAAAGACTTGATACACAGGTTCGGGGCTGGAGCCTTATGCTGGAAAGGTAATAAAATACAACTAAGCTGCTTTACTCTACATTCTTTTATCTCTGTTGTGAAAACTAAAGGGCGGGCTGAGGCACTTGATTTAAATAAAACAGTGCCTGAGACAGTAGAAGAAGCAGCAGGGGATTGGAGACTTGATGATATAAAGGGCCTCCTTGGTTGTAATTTCAAAGCAGATATGCATGATAGAAAGGTTTCCCTCTTAAGTGGTGGTGAGAAGCCGAGAAGTTTGTCTCCCTTTTGTTGGGCACGCCTTGCCTTCTGCAAGTTCATGGTAAAGCCATCTACTCTGCTAGTTCTGGATGAACCGACAAATCACTTGGACATTCCTTCAAAAGTGATGCTTGTGGGAATAAATGAGTACAAAGGCACTGTTATCACAGTTTCTCTTGACCGATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

385

Amino Acids

43.68

Weight (kDa)

5.44

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 83 - 156 1e-07 ABC transporter
ABC_tran_Xtn PF12848 195 - 248 1.5e-13 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
Acc36I ACCTGC 1 cut(s) 166
AccII CGCG 3 cut(s) 9, 23, 32
AciI CCGC 2 cut(s) 30, 823
AcuI CTGAAG 2 cut(s) 257, 413
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 4 cut(s) 12, 106, 574, 1121
AfiI CCNNNNNNNGG 4 cut(s) 341, 359, 750, 1002
AflII CTTAAG 1 cut(s) 961
AgsI TTSAA 3 cut(s) 662, 928, 1092
AjnI CCWGG 2 cut(s) 66, 605
AluBI AGCT 7 cut(s) 95, 122, 145, 262, 271, 554, 777
AluI AGCT 7 cut(s) 95, 122, 145, 262, 271, 554, 777
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 5 cut(s) 68, 607, 854, 883, 996
AlwNI CAGNNNCTG 1 cut(s) 857
AoxI GGCC 1 cut(s) 907
ApeKI GCWGC 5 cut(s) 650, 674, 688, 777, 875
Asp700I GAANNNNTTC 2 cut(s) 625, 952
AspLEI GCGC 3 cut(s) 25, 286, 352
AspS9I GGNCC 1 cut(s) 907
AsuHPI GGTGA 2 cut(s) 461, 983
AsuNHI GCTAGC 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 1009
BaeI ACNNNNGTAYC 2 cut(s) 713, 746
Bbv12I GWGCWC 1 cut(s) 708
BbvCI CCTCAGC 1 cut(s) 828
BbvI GCAGC 5 cut(s) 661, 662, 700, 764, 887
BccI CCATC 3 cut(s) 235, 353, 1048
BciT130I CCWGG 2 cut(s) 68, 607
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 5 cut(s) 68, 607, 854, 883, 996
BfaI CTAG 2 cut(s) 92, 1052
BfrI CTTAAG 1 cut(s) 961
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 5 cut(s) 651, 675, 689, 778, 876
BlsI GCNGC 5 cut(s) 652, 676, 690, 779, 877
Bme1390I CCNGG 2 cut(s) 68, 607
BmgT120I GGNCC 1 cut(s) 907
BmiI GGNNCC 1 cut(s) 742
BmrFI CCNGG 2 cut(s) 68, 607
BmsI GCATC 3 cut(s) 162, 301, 1089
BmtI GCTAGC 1 cut(s) 95
BpmI CTGGAG 4 cut(s) 50, 212, 589, 759
Bpu10I CCTNAGC 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 319
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 913
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 359, 750, 1002
BseBI CCWGG 2 cut(s) 68, 607
BseDI CCNNGG 1 cut(s) 913
BseGI GGATG 5 cut(s) 316, 364, 411, 526, 1066
BseLI CCNNNNNNNGG 4 cut(s) 341, 359, 750, 1002
BseMII CTCAG 4 cut(s) 149, 621, 819, 849
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 1009
BseXI GCAGC 5 cut(s) 661, 662, 700, 764, 887
Bsh1236I CGCG 3 cut(s) 9, 23, 32
BshFI GGCC 1 cut(s) 909
BsiHKAI GWGCWC 1 cut(s) 708
BsiSI CCGG 2 cut(s) 335, 353
BslFI GGGAC 3 cut(s) 143, 377, 695
BslI CCNNNNNNNGG 4 cut(s) 341, 359, 750, 1002
BsmAI GTCTC 5 cut(s) 68, 607, 854, 883, 996
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 3 cut(s) 143, 377, 695
BsnI GGCC 1 cut(s) 909
Bsp1286I GDGCHC 2 cut(s) 708, 1009
Bsp1407I TGTACA 2 cut(s) 104, 572
Bsp143I GATC 1 cut(s) 562
BspACI CCGC 2 cut(s) 30, 823
BspANI GGCC 1 cut(s) 909
BspCNI CTCAG 4 cut(s) 148, 622, 820, 850
BspFNI CGCG 3 cut(s) 9, 23, 32
BspLI GGNNCC 1 cut(s) 742
BspMI ACCTGC 1 cut(s) 166
BspOI GCTAGC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 135
BspTI CTTAAG 1 cut(s) 961
BsrGI TGTACA 2 cut(s) 104, 572
BssECI CCNNGG 1 cut(s) 913
BssMI GATC 1 cut(s) 562
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 913
Bst2UI CCWGG 2 cut(s) 68, 607
Bst4CI ACNGT 5 cut(s) 111, 853, 865, 1132, 1141
Bst6I CTCTTC 2 cut(s) 76, 135
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 1 cut(s) 961
BstAPI GCANNNNNTGC 2 cut(s) 523, 1013
BstAUI TGTACA 2 cut(s) 104, 572
BstC8I GCNNGC 3 cut(s) 93, 825, 1009
BstDEI CTNAG 5 cut(s) 135, 630, 773, 828, 858
BstF5I GGATG 5 cut(s) 316, 364, 411, 526, 1066
BstFNI CGCG 3 cut(s) 9, 23, 32
BstHHI GCGC 3 cut(s) 25, 286, 352
BstKTI GATC 1 cut(s) 565
BstMAI GTCTC 5 cut(s) 68, 607, 854, 883, 996
BstMBI GATC 1 cut(s) 562
BstMWI GCNNNNNNNGC 6 cut(s) 29, 268, 457, 523, 650, 1013
BstNI CCWGG 2 cut(s) 68, 607
BstSCI CCNGG 2 cut(s) 66, 605
BstSLI GKGCMC 1 cut(s) 1009
BstUI CGCG 3 cut(s) 9, 23, 32
BstV1I GCAGC 5 cut(s) 661, 662, 700, 764, 887
BsuRI GGCC 1 cut(s) 909
BtsCI GGATG 5 cut(s) 316, 364, 411, 526, 1066
BtsIMutI CAGTG 3 cut(s) 107, 858, 1128
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 3 cut(s) 93, 825, 1009
CaiI CAGNNNCTG 1 cut(s) 857
CfoI GCGC 3 cut(s) 25, 286, 352
Cfr13I GGNCC 1 cut(s) 907
CseI GACGC 1 cut(s) 46
Csp6I GTAC 4 cut(s) 11, 105, 573, 1120
CspCI CAANNNNNGTGG 2 cut(s) 564, 599
CviAII CATG 4 cut(s) 331, 654, 941, 1030
CviQI GTAC 4 cut(s) 11, 105, 573, 1120
DdeI CTNAG 5 cut(s) 135, 630, 773, 828, 858
DpnI GATC 1 cut(s) 564
DpnII GATC 1 cut(s) 562
DraI TTTAAA 1 cut(s) 843
Eam1104I CTCTTC 2 cut(s) 76, 135
EarI CTCTTC 2 cut(s) 76, 135
Eco130I CCWWGG 1 cut(s) 913
Eco57I CTGAAG 2 cut(s) 257, 413
EcoO109I RGGNCCY 1 cut(s) 907
EcoRII CCWGG 2 cut(s) 66, 605
EcoT14I CCWWGG 1 cut(s) 913
EcoT22I ATGCAT 1 cut(s) 942
ErhI CCWWGG 1 cut(s) 913
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 4 cut(s) 334, 657, 944, 1033
FalI AAGNNNNNCTT 2 cut(s) 1086, 1118
FaqI GGGAC 3 cut(s) 143, 377, 695
FatI CATG 4 cut(s) 330, 653, 940, 1029
FauI CCCGC 2 cut(s) 37, 816
FauNDI CATATG 1 cut(s) 539
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 5 cut(s) 651, 675, 689, 778, 876
FokI GGATG 5 cut(s) 323, 371, 418, 533, 1073
Fsp4HI GCNGC 5 cut(s) 651, 675, 689, 778, 876
FspBI CTAG 2 cut(s) 92, 1052
GlaI GCGC 3 cut(s) 24, 285, 351
GluI GCNGC 5 cut(s) 651, 675, 689, 778, 876
GsuI CTGGAG 4 cut(s) 50, 212, 589, 759
HaeIII GGCC 1 cut(s) 909
HapII CCGG 2 cut(s) 335, 353
HgaI GACGC 1 cut(s) 46
HhaI GCGC 3 cut(s) 25, 286, 352
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 4 cut(s) 334, 657, 944, 1033
Hin6I GCGC 3 cut(s) 23, 284, 350
HinP1I GCGC 3 cut(s) 23, 284, 350
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 2 cut(s) 260, 269
HinfI GANTC 2 cut(s) 131, 277
HpaII CCGG 2 cut(s) 335, 353
HphI GGTGA 2 cut(s) 461, 983
Hpy166II GTNNAC 4 cut(s) 105, 107, 481, 573
Hpy188I TCNGA 4 cut(s) 74, 184, 276, 631
Hpy188III TCNNGA 5 cut(s) 137, 545, 560, 1058, 1148
Hpy8I GTNNAC 4 cut(s) 105, 107, 481, 573
Hpy99I CGWCG 2 cut(s) 37, 40
HpyAV CCTTC 3 cut(s) 688, 1027, 1098
HpyCH4III ACNGT 5 cut(s) 111, 853, 865, 1132, 1141
HpyCH4IV ACGT 2 cut(s) 477, 611
HpyCH4V TGCA 5 cut(s) 175, 202, 644, 940, 1023
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 268, 457, 523, 650, 1013
HpyF3I CTNAG 5 cut(s) 135, 630, 773, 828, 858
HpySE526I ACGT 2 cut(s) 477, 611
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 4 cut(s) 334, 657, 944, 1033
HspAI GCGC 3 cut(s) 23, 284, 350
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 1 cut(s) 562
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 740
Lsp1109I GCAGC 5 cut(s) 661, 662, 700, 764, 887
LweI GCATC 3 cut(s) 162, 301, 1089
MaeI CTAG 2 cut(s) 92, 1052
MaeII ACGT 2 cut(s) 477, 611
MaeIII GTNAC 3 cut(s) 46, 293, 408
MalI GATC 1 cut(s) 564
MboI GATC 1 cut(s) 562
MboII GAAGA 7 cut(s) 90, 93, 152, 328, 430, 512, 881
MfeI CAATTG 1 cut(s) 566
MhlI GDGCHC 2 cut(s) 708, 1009
MluCI AATT 5 cut(s) 54, 566, 622, 699, 922
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 192
Mph1103I ATGCAT 1 cut(s) 942
MroXI GAANNNNTTC 2 cut(s) 625, 952
MseI TTAA 3 cut(s) 162, 842, 962
MspCI CTTAAG 1 cut(s) 961
MspI CCGG 2 cut(s) 335, 353
MspR9I CCNGG 2 cut(s) 68, 607
MunI CAATTG 1 cut(s) 566
MvaI CCWGG 2 cut(s) 68, 607
MvnI CGCG 3 cut(s) 9, 23, 32
MwoI GCNNNNNNNGC 6 cut(s) 29, 268, 457, 523, 650, 1013
NdeI CATATG 1 cut(s) 539
NdeII GATC 1 cut(s) 562
NheI GCTAGC 1 cut(s) 91
NlaIII CATG 4 cut(s) 334, 657, 944, 1033
NlaIV GGNNCC 1 cut(s) 742
NmeAIII GCCGAG 1 cut(s) 1005
NmuCI GTSAC 3 cut(s) 46, 293, 408
NsiI ATGCAT 1 cut(s) 942
PaqCI CACCTGC 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PdmI GAANNNNTTC 2 cut(s) 625, 952
PfeI GAWTC 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 605
PkrI GCNGC 5 cut(s) 652, 676, 690, 779, 877
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 66, 605
PspGI CCWGG 2 cut(s) 66, 605
PspN4I GGNNCC 1 cut(s) 742
PspPI GGNCC 1 cut(s) 907
PstNI CAGNNNCTG 1 cut(s) 857
RsaI GTAC 4 cut(s) 12, 106, 574, 1121
RsaNI GTAC 4 cut(s) 11, 105, 573, 1120
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 162, 842, 962
SatI GCNGC 5 cut(s) 651, 675, 689, 778, 876
Sau3AI GATC 1 cut(s) 562
Sau96I GGNCC 1 cut(s) 907
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 68, 607
SduI GDGCHC 2 cut(s) 708, 1009
SfaNI GCATC 3 cut(s) 162, 301, 1089
SmiI ATTTAAAT 1 cut(s) 843
SmlI CTYRAG 2 cut(s) 298, 961
SmoI CTYRAG 2 cut(s) 298, 961
Sse9I AATT 5 cut(s) 54, 566, 622, 699, 922
SsiI CCGC 2 cut(s) 30, 823
SspMI CTAG 2 cut(s) 92, 1052
StyD4I CCNGG 2 cut(s) 66, 605
StyI CCWWGG 1 cut(s) 913
SwaI ATTTAAAT 1 cut(s) 843
TaaI ACNGT 5 cut(s) 111, 853, 865, 1132, 1141
TaiI ACGT 2 cut(s) 480, 614
TaqI TCGA 2 cut(s) 489, 498
TaqII GACCGA 1 cut(s) 564
TasI AATT 5 cut(s) 54, 566, 622, 699, 922
TatI WGTACW 3 cut(s) 104, 572, 1119
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 3 cut(s) 162, 842, 962
Tru9I TTAA 3 cut(s) 162, 842, 962
TscAI CASTG 3 cut(s) 114, 858, 1135
TseFI GTSAC 3 cut(s) 46, 293, 408
TseI GCWGC 5 cut(s) 650, 674, 688, 777, 875
Tsp45I GTSAC 3 cut(s) 46, 293, 408
TspDTI ATGAA 3 cut(s) 319, 1018, 1077
TspRI CASTG 3 cut(s) 114, 858, 1135
Vha464I CTTAAG 1 cut(s) 961
XmnI GAANNNNTTC 2 cut(s) 625, 952
XspI CTAG 2 cut(s) 92, 1052
Zsp2I ATGCAT 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.