Rh2BG275500

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
29938762 .. 29943659
4898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG275500.1

Sequence Viewer

Length: 1089 bp
ATGGAGGTGTCAGAGAGGCTGGAGAGGGTGCAAAAGGCGTTGGAGAGTGCTGTGGAGGATATGGACTTGATGGGGAGGCTTTTGGATGAGCTTGGTAAGCTTCAGAATCAGGCGCAGGAGTGTGACTTGAGTATGGTGGATGCAAAGATTAGTAAGTTGATGCCGGAACTTGAGTTTGCGCCCGAGGATGGGGATAGGTTGGTGGCTTCATTTAGTAGTGGTTGGCAGATGAGGATGTCACTTGGGAAGATTTTGCTTCAGCACCCTGATTTACTACTGCTGGACGAGCCTACAAATCACCTTGACCTTGACACAATCGAGTGGCTCGAAGATCATCTCAATCAGCAAGATGTGCCAATGGTTATCATATCTCATGGCCGAGCTTTTCTCGATCAATTTTGTACAAAAATAGTGGAAACTGATATGGGTGTCTCCAGGATGTATGGGGGAAATTATTCTGAGTATTATATTGCAAAGGCAGCATGGATTGAAAGTCAAAATGCTGCTTGGGAGAAGCAGCAGAAGGAAATTGAGCACACAAAAGACTTGATACACAGGTTGGGCGCTGGAGCCTTCTGCTGGAAAGTAGAAGAAGCAGCAGAGGATTGGAGACTTGATGATATAAAGGGCCTCCTTGGTGGTTGTAATTTGAAAGCAGATATGCTTGATAGAAAGTTTTCCCTCTTAAGTGGTGGTGAGAAGTACTATCTAGAGAAGAATCTAGATGCTAGGGAAGGAGAGCTCGAGCGTGAGGCAGAGATTGAGGAGAGGGCTCCTAAAGTCAAAGCCAAATCAACGATGGCTGAAAAGGAAGATCGGAAGAAGCAAAAGATGCAGGCATTCCAGCAAGCAAAGGCAAAATCGAAAGGAACAAAGAACGCTAAGAGATGGAATAAAAGTAGCTTATTTCGAAGAGGCCCACTTTACCAGCTAGTCGATCATGTATGTATATACCATAGTACCATACTAACTGTTAATAGATTTCCAGGAACAAGTGAGGCTGCACCAGAAATCCTGTACCTGAAGCATCTGCTTTTTTGCTCATTAATCGCAGAATATGAAACACAAGTACGTGCTTATAAAATCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

362

Amino Acids

41.55

Weight (kDa)

5.47

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 45 - 99 3.6e-07 ABC transporter
ABC_tran_Xtn PF12848 138 - 191 8.5e-13 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1080
AcoI YGGCCR 1 cut(s) 376
AcuI CTGAAG 3 cut(s) 86, 242, 1043
AfaI GTAC 5 cut(s) 403, 704, 961, 1019, 1071
AfiI CCNNNNNNNGG 3 cut(s) 188, 189, 579
AflII CTTAAG 1 cut(s) 685
AgsI TTSAA 2 cut(s) 491, 652
AjnI CCWGG 2 cut(s) 434, 985
AluBI AGCT 6 cut(s) 91, 100, 383, 742, 903, 931
AluI AGCT 6 cut(s) 91, 100, 383, 742, 903, 931
Alw21I GWGCWC 2 cut(s) 537, 744
Alw26I GTCTC 2 cut(s) 436, 604
Ama87I CYCGRG 2 cut(s) 182, 743
AoxI GGCC 3 cut(s) 376, 628, 916
ApeKI GCWGC 5 cut(s) 479, 503, 517, 596, 1001
AseI ATTAAT 1 cut(s) 1046
Asp700I GAANNNNTTC 2 cut(s) 454, 676
AspLEI GCGC 3 cut(s) 115, 181, 566
AspS9I GGNCC 2 cut(s) 628, 917
AsuHPI GGTGA 2 cut(s) 290, 707
AsuII TTCGAA 1 cut(s) 910
AvaI CYCGRG 2 cut(s) 182, 743
BaeI ACNNNNGTAYC 4 cut(s) 542, 575, 943, 976
BanII GRGCYC 2 cut(s) 744, 775
Bbv12I GWGCWC 2 cut(s) 537, 744
BbvI GCAGC 5 cut(s) 490, 491, 529, 608, 988
BccI CCATC 4 cut(s) 64, 182, 793, 882
BciT130I CCWGG 2 cut(s) 436, 987
BcoDI GTCTC 2 cut(s) 436, 604
BfaI CTAG 4 cut(s) 710, 722, 729, 932
BfoI RGCGCY 1 cut(s) 567
BfrI CTTAAG 1 cut(s) 685
BisI GCNGC 5 cut(s) 480, 504, 518, 597, 1002
BlsI GCNGC 5 cut(s) 481, 505, 519, 598, 1003
BmcAI AGTACT 1 cut(s) 704
Bme1390I CCNGG 2 cut(s) 436, 987
BmeT110I CYCGRG 2 cut(s) 182, 743
BmgT120I GGNCC 2 cut(s) 628, 917
BmiI GGNNCC 2 cut(s) 571, 774
BmrFI CCNGG 2 cut(s) 436, 987
BmsI GCATC 5 cut(s) 130, 150, 715, 822, 1036
BplI GAGNNNNNCTC 2 cut(s) 372, 404
BpmI CTGGAG 3 cut(s) 41, 418, 588
Bpu14I TTCGAA 1 cut(s) 910
BpuEI CTTGAG 2 cut(s) 148, 191
BsaAI YACGTR 1 cut(s) 1073
BsaJI CCNNGG 2 cut(s) 183, 634
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 189, 579
BseBI CCWGG 2 cut(s) 436, 987
BseDI CCNNGG 2 cut(s) 183, 634
BseGI GGATG 5 cut(s) 91, 145, 193, 240, 444
BseLI CCNNNNNNNGG 3 cut(s) 188, 189, 579
BseMII CTCAG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 779
BseXI GCAGC 5 cut(s) 490, 491, 529, 608, 988
BsgI GTGCAG 1 cut(s) 987
BshFI GGCC 3 cut(s) 378, 630, 918
BsiHKAI GWGCWC 2 cut(s) 537, 744
BsiHKCI CYCGRG 2 cut(s) 182, 743
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 3 cut(s) 188, 189, 579
BsmAI GTCTC 2 cut(s) 436, 604
BsmI GAATGC 1 cut(s) 839
BsnI GGCC 3 cut(s) 378, 630, 918
BsoBI CYCGRG 2 cut(s) 182, 743
Bsp119I TTCGAA 1 cut(s) 910
Bsp1286I GDGCHC 3 cut(s) 537, 744, 775
Bsp1407I TGTACA 1 cut(s) 401
Bsp143I GATC 4 cut(s) 331, 391, 814, 937
BspANI GGCC 3 cut(s) 378, 630, 918
BspCNI CTCAG 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 571, 774
BspT104I TTCGAA 1 cut(s) 910
BspTI CTTAAG 1 cut(s) 685
BsrGI TGTACA 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 183, 634
BssMI GATC 4 cut(s) 331, 391, 814, 937
BssT1I CCWWGG 1 cut(s) 634
Bst2UI CCWGG 2 cut(s) 436, 987
Bst4CI ACNGT 1 cut(s) 973
Bst6I CTCTTC 1 cut(s) 907
BstAFI CTTAAG 1 cut(s) 685
BstAPI GCANNNNNTGC 2 cut(s) 352, 832
BstAUI TGTACA 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 1073
BstBI TTCGAA 1 cut(s) 910
BstC8I GCNNGC 2 cut(s) 837, 849
BstDEI CTNAG 2 cut(s) 459, 882
BstF5I GGATG 5 cut(s) 91, 145, 193, 240, 444
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 3 cut(s) 115, 181, 566
BstKTI GATC 4 cut(s) 334, 394, 817, 940
BstMAI GTCTC 2 cut(s) 436, 604
BstMBI GATC 4 cut(s) 331, 391, 814, 937
BstMWI GCNNNNNNNGC 5 cut(s) 97, 286, 352, 479, 832
BstNI CCWGG 2 cut(s) 436, 987
BstSCI CCNGG 2 cut(s) 434, 985
BstV1I GCAGC 5 cut(s) 490, 491, 529, 608, 988
BsuRI GGCC 3 cut(s) 378, 630, 918
BtsCI GGATG 5 cut(s) 91, 145, 193, 240, 444
Cac8I GCNNGC 2 cut(s) 837, 849
CfoI GCGC 3 cut(s) 115, 181, 566
Cfr13I GGNCC 2 cut(s) 628, 917
Csp6I GTAC 5 cut(s) 402, 703, 960, 1018, 1070
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 3 cut(s) 374, 483, 941
CviQI GTAC 5 cut(s) 402, 703, 960, 1018, 1070
DdeI CTNAG 2 cut(s) 459, 882
DpnI GATC 4 cut(s) 333, 393, 816, 939
DpnII GATC 4 cut(s) 331, 391, 814, 937
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 907
EarI CTCTTC 1 cut(s) 907
Ecl136II GAGCTC 1 cut(s) 742
Eco130I CCWWGG 1 cut(s) 634
Eco24I GRGCYC 2 cut(s) 744, 775
Eco53kI GAGCTC 1 cut(s) 742
Eco57I CTGAAG 3 cut(s) 86, 242, 1043
Eco88I CYCGRG 2 cut(s) 182, 743
EcoICRI GAGCTC 1 cut(s) 742
EcoO109I RGGNCCY 1 cut(s) 628
EcoRII CCWGG 2 cut(s) 434, 985
EcoT14I CCWWGG 1 cut(s) 634
EcoT38I GRGCYC 2 cut(s) 744, 775
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 3 cut(s) 377, 486, 944
FatI CATG 3 cut(s) 373, 482, 940
Fnu4HI GCNGC 5 cut(s) 480, 504, 518, 597, 1002
FokI GGATG 5 cut(s) 98, 152, 200, 247, 451
FriOI GRGCYC 2 cut(s) 744, 775
Fsp4HI GCNGC 5 cut(s) 480, 504, 518, 597, 1002
FspBI CTAG 4 cut(s) 710, 722, 729, 932
GlaI GCGC 3 cut(s) 114, 180, 565
GluI GCNGC 5 cut(s) 480, 504, 518, 597, 1002
GsuI CTGGAG 3 cut(s) 41, 418, 588
HaeII RGCGCY 1 cut(s) 567
HaeIII GGCC 3 cut(s) 378, 630, 918
HapII CCGG 1 cut(s) 164
HhaI GCGC 3 cut(s) 115, 181, 566
Hin1II CATG 3 cut(s) 377, 486, 944
Hin6I GCGC 3 cut(s) 113, 179, 564
HinP1I GCGC 3 cut(s) 113, 179, 564
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 106, 718
HpaII CCGG 1 cut(s) 164
HphI GGTGA 2 cut(s) 290, 707
Hpy188I TCNGA 4 cut(s) 13, 105, 460, 819
Hpy188III TCNNGA 3 cut(s) 389, 710, 722
HpyAV CCTTC 3 cut(s) 517, 583, 728
HpyCH4III ACNGT 1 cut(s) 973
HpyCH4IV ACGT 1 cut(s) 1072
HpyCH4V TGCA 5 cut(s) 31, 143, 473, 835, 1004
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 286, 352, 479, 832
HpyF3I CTNAG 2 cut(s) 459, 882
HpySE526I ACGT 1 cut(s) 1072
Hsp92II CATG 3 cut(s) 377, 486, 944
HspAI GCGC 3 cut(s) 113, 179, 564
Kzo9I GATC 4 cut(s) 331, 391, 814, 937
LmnI GCTCC 2 cut(s) 569, 778
Lsp1109I GCAGC 5 cut(s) 490, 491, 529, 608, 988
LweI GCATC 5 cut(s) 130, 150, 715, 822, 1036
MaeI CTAG 4 cut(s) 710, 722, 729, 932
MaeII ACGT 1 cut(s) 1072
MaeIII GTNAC 2 cut(s) 122, 237
MalI GATC 4 cut(s) 333, 393, 816, 939
MboI GATC 4 cut(s) 331, 391, 814, 937
MboII GAAGA 7 cut(s) 259, 341, 602, 727, 824, 832, 924
MhlI GDGCHC 3 cut(s) 537, 744, 775
MluCI AATT 4 cut(s) 395, 451, 528, 646
MmeI TCCRAC 1 cut(s) 21
MroXI GAANNNNTTC 2 cut(s) 454, 676
MseI TTAA 3 cut(s) 686, 975, 1046
MspCI CTTAAG 1 cut(s) 685
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 2 cut(s) 436, 987
Mva1269I GAATGC 1 cut(s) 839
MvaI CCWGG 2 cut(s) 436, 987
MwoI GCNNNNNNNGC 5 cut(s) 97, 286, 352, 479, 832
NdeII GATC 4 cut(s) 331, 391, 814, 937
NlaIII CATG 3 cut(s) 377, 486, 944
NlaIV GGNNCC 2 cut(s) 571, 774
NmeAIII GCCGAG 1 cut(s) 404
NmuCI GTSAC 2 cut(s) 122, 237
NspV TTCGAA 1 cut(s) 910
PaeR7I CTCGAG 1 cut(s) 743
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PctI GAATGC 1 cut(s) 839
PdmI GAANNNNTTC 2 cut(s) 454, 676
PfeI GAWTC 2 cut(s) 106, 718
PfoI TCCNGGA 2 cut(s) 434, 985
PkrI GCNGC 5 cut(s) 481, 505, 519, 598, 1003
Ppu21I YACGTR 1 cut(s) 1073
PshBI ATTAAT 1 cut(s) 1046
PsiI TTATAA 1 cut(s) 1080
Psp124BI GAGCTC 1 cut(s) 744
Psp6I CCWGG 2 cut(s) 434, 985
PspGI CCWGG 2 cut(s) 434, 985
PspN4I GGNNCC 2 cut(s) 571, 774
PspPI GGNCC 2 cut(s) 628, 917
PspXI VCTCGAGB 1 cut(s) 743
RsaI GTAC 5 cut(s) 403, 704, 961, 1019, 1071
RsaNI GTAC 5 cut(s) 402, 703, 960, 1018, 1070
SacI GAGCTC 1 cut(s) 744
SaqAI TTAA 3 cut(s) 686, 975, 1046
SatI GCNGC 5 cut(s) 480, 504, 518, 597, 1002
Sau3AI GATC 4 cut(s) 331, 391, 814, 937
Sau96I GGNCC 2 cut(s) 628, 917
ScaI AGTACT 1 cut(s) 704
ScrFI CCNGG 2 cut(s) 436, 987
SduI GDGCHC 3 cut(s) 537, 744, 775
SfaNI GCATC 5 cut(s) 130, 150, 715, 822, 1036
Sfr274I CTCGAG 1 cut(s) 743
SfuI TTCGAA 1 cut(s) 910
SlaI CTCGAG 1 cut(s) 743
SmlI CTYRAG 4 cut(s) 127, 170, 685, 743
SmoI CTYRAG 4 cut(s) 127, 170, 685, 743
Sse9I AATT 4 cut(s) 395, 451, 528, 646
SspMI CTAG 4 cut(s) 710, 722, 729, 932
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 2 cut(s) 434, 985
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 1 cut(s) 973
TaiI ACGT 1 cut(s) 1075
TaqI TCGA 7 cut(s) 318, 327, 390, 744, 863, 910, 936
TasI AATT 4 cut(s) 395, 451, 528, 646
TatI WGTACW 2 cut(s) 401, 702
TfiI GAWTC 2 cut(s) 106, 718
Tru1I TTAA 3 cut(s) 686, 975, 1046
Tru9I TTAA 3 cut(s) 686, 975, 1046
TseFI GTSAC 2 cut(s) 122, 237
TseI GCWGC 5 cut(s) 479, 503, 517, 596, 1001
Tsp45I GTSAC 2 cut(s) 122, 237
TspDTI ATGAA 2 cut(s) 198, 1074
Vha464I CTTAAG 1 cut(s) 685
VspI ATTAAT 1 cut(s) 1046
XbaI TCTAGA 2 cut(s) 709, 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 796
XhoI CTCGAG 1 cut(s) 743
XmnI GAANNNNTTC 2 cut(s) 454, 676
XspI CTAG 4 cut(s) 710, 722, 729, 932
ZrmI AGTACT 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.