Rorug06G0216100

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000380
Physical Location & Seq
Forward (+)
34513074 .. 34513714
641 bp
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UTR
Exon/CDS
Intron
Rorug06G0216100.1

Sequence Viewer

Length: 546 bp
ATGTCAACTTTCATAGAAGATGTGGTTCACTCATTGAAGGTCTCTTTAGAAGACCTATATCTTGGAACCTCAAAGAAACTTTCCCAATCTCGCAATGTGTTGTGCTCCAAGTGCAAAAGCAAGGGGTCAAAATTTGGAGCCTTGACCAACTGTGATGGTTACGTTGCCAATGAACTGATGTACCATGCTTGCAATAAATATAAGGGTACTGGAGAGACCATCAGTGACAAGGACTTCTATAGACAGTGCAAGGGAGAGAAAGTTGTTCAAGAAAAGAAAGTTTTAGAAGTCCATACGGAGAAGGATATGCAGAATGGACAGAAGTTCGCATTTCCTGGTGAACAAAAGGAACATCCCAAATTCAAGAGAAAGACGAATGATCTTTTTGTGGAGCACTCTTTATCACTCACAGATGCTCTATGTGGTTTCCAATTTGTGCTGAACCATATGGATAGCAGGCAGCTACTTATCAAATCCGACCATGGTGAAGGTTTGAAGCCTGATTCGTCTAAGGCCATCAATGATGAGGGTATGCAAATGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

181

Amino Acids

20.51

Weight (kDa)

8.14

Isoelectric Point (pI)

26.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 9 - 179 7.3e-14 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 131, 359
AfaI GTAC 3 cut(s) 182, 208, 542
AgsI TTSAA 4 cut(s) 37, 269, 364, 496
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 463
AluI AGCT 1 cut(s) 463
Alw21I GWGCWC 2 cut(s) 107, 396
Alw26I GTCTC 2 cut(s) 46, 209
AoxI GGCC 1 cut(s) 513
ApeKI GCWGC 1 cut(s) 460
ApoI RAATTY 2 cut(s) 131, 359
AsuHPI GGTGA 2 cut(s) 350, 497
BaeI ACNNNNGTAYC 2 cut(s) 164, 197
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 107, 396
BbvI GCAGC 1 cut(s) 472
BccI CCATC 3 cut(s) 149, 227, 524
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 46, 209
BfaI CTAG 1 cut(s) 544
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 1 cut(s) 461
BlsI GCNGC 1 cut(s) 462
Bme1390I CCNGG 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 67, 139
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 231
BsaI GGTCTC 2 cut(s) 46, 209
BsaJI CCNNGG 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 472
BshFI GGCC 1 cut(s) 515
BsiHKAI GWGCWC 2 cut(s) 107, 396
BsmAI GTCTC 2 cut(s) 46, 209
BsnI GGCC 1 cut(s) 515
Bso31I GGTCTC 2 cut(s) 46, 209
Bsp1286I GDGCHC 2 cut(s) 107, 396
Bsp143I GATC 1 cut(s) 379
Bsp19I CCATGG 1 cut(s) 481
BspANI GGCC 1 cut(s) 515
BspLI GGNNCC 2 cut(s) 67, 139
BspTNI GGTCTC 2 cut(s) 46, 209
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 481
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 152, 246
BstC8I GCNNGC 2 cut(s) 190, 458
BstDEI CTNAG 1 cut(s) 510
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 2 cut(s) 46, 209
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 515
BtgI CCRYGG 1 cut(s) 481
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 229, 251
Cac8I GCNNGC 2 cut(s) 190, 458
Csp6I GTAC 3 cut(s) 181, 207, 541
CviAII CATG 2 cut(s) 185, 482
CviJI RGCY 4 cut(s) 140, 463, 499, 515
CviKI_1 RGCY 4 cut(s) 140, 463, 499, 515
CviQI GTAC 3 cut(s) 181, 207, 541
DdeI CTNAG 1 cut(s) 510
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 481
Eco31I GGTCTC 2 cut(s) 46, 209
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 2 cut(s) 188, 485
FatI CATG 2 cut(s) 184, 481
FauNDI CATATG 1 cut(s) 447
Fnu4HI GCNGC 1 cut(s) 461
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 461
FspBI CTAG 1 cut(s) 544
GluI GCNGC 1 cut(s) 461
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 515
Hin1II CATG 2 cut(s) 188, 485
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 503
HphI GGTGA 2 cut(s) 350, 497
Hpy166II GTNNAC 3 cut(s) 6, 28, 341
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 2 cut(s) 269, 364
Hpy8I GTNNAC 3 cut(s) 6, 28, 341
HpyAV CCTTC 3 cut(s) 31, 295, 482
HpyCH4III ACNGT 2 cut(s) 152, 246
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 5 cut(s) 114, 192, 249, 310, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 188, 485
Kzo9I GATC 1 cut(s) 379
LmnI GCTCC 3 cut(s) 110, 137, 391
LpnPI CCDG 5 cut(s) 195, 321, 348, 442, 513
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 544
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 158, 224
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 2 cut(s) 29, 62
MhlI GDGCHC 2 cut(s) 107, 396
MluCI AATT 3 cut(s) 131, 359, 431
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 2 cut(s) 79, 520
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 111
NcoI CCATGG 1 cut(s) 481
NdeI CATATG 1 cut(s) 447
NdeII GATC 1 cut(s) 379
NlaIII CATG 2 cut(s) 188, 485
NlaIV GGNNCC 2 cut(s) 67, 139
NmuCI GTSAC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 67, 139
RsaI GTAC 3 cut(s) 182, 208, 542
RsaNI GTAC 3 cut(s) 181, 207, 541
SatI GCNGC 1 cut(s) 461
Sau3AI GATC 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 2 cut(s) 107, 396
SetI ASST 6 cut(s) 42, 57, 71, 165, 465, 493
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 238
Sse9I AATT 3 cut(s) 131, 359, 431
SspMI CTAG 1 cut(s) 544
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 2 cut(s) 152, 246
TaiI ACGT 1 cut(s) 165
TasI AATT 3 cut(s) 131, 359, 431
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 1 cut(s) 503
TscAI CASTG 2 cut(s) 229, 251
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 460
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 2 cut(s) 229, 251
XapI RAATTY 2 cut(s) 131, 359
XspI CTAG 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.