Rh1AG205600

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000380
Physical Location & Seq
Reverse (-)
38942402 .. 38943746
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG205600.1

Sequence Viewer

Length: 435 bp
ATGATAGCTGCTGTTGGGGCTGCCACAACCATTTCAACAAATCCATTGTGGGTTGTTAAGACAAGACTGCAAAAAAGGCTTCATTGTGTTGCAGTCTCATTGAAGAACCTAAATCAGGCCTTTAATTGGAAATGGGTGGGATTTCAGAGGTCAAAGTTAATCCAATATCAGTCTAAGATGGATGCATTGGCCAAGCAGACTTGGGTGGATCAAATTACACAACTACTGAAATCTGGAATATCAGAGTTTGGAAACAATGAGAACGTGTCATCAGCACCTCAGGATCCAGACCACATGTCCTCTACATATCAAGTTGACAAGGAGGGTGCAGAACAATTGGAACTGGAAAAGCGGGAAGCCATAGGTGTGCTTGATGGCTGTCTTAGATTATACCTTCCTGGTTCTTATGTTATGCCTTGCTTGATTAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 SF1-HH

Protein Analysis

144

Amino Acids

16.19

Weight (kDa)

8.79

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 352
AclWI GGATC 3 cut(s) 216, 278, 291
AcoI YGGCCR 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 115, 126
AflIII ACRYGT 2 cut(s) 264, 294
AgsI TTSAA 2 cut(s) 36, 103
AhdI GACNNNNNGTC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 3 cut(s) 216, 278, 291
AoxI GGCC 2 cut(s) 117, 189
ApeKI GCWGC 2 cut(s) 8, 20
AxyI CCTNAGG 1 cut(s) 279
BalI TGGCCA 1 cut(s) 191
BamHI GGATCC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 7
BccI CCATC 2 cut(s) 172, 368
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 100
BisI GCNGC 2 cut(s) 9, 21
BlsI GCNGC 2 cut(s) 10, 22
Bme1390I CCNGG 1 cut(s) 399
BmeRI GACNNNNNGTC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 126
Bse1I ACTGG 1 cut(s) 348
Bse21I CCTNAGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 399
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 115, 126
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 2 cut(s) 119, 191
BslI CCNNNNNNNGG 2 cut(s) 115, 126
BsmAI GTCTC 1 cut(s) 100
BsnI GGCC 2 cut(s) 119, 191
Bsp143I GATC 2 cut(s) 208, 283
BspACI CCGC 1 cut(s) 352
BspANI GGCC 2 cut(s) 119, 191
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 3 cut(s) 216, 278, 291
BsrI ACTGG 1 cut(s) 348
BssMI GATC 2 cut(s) 208, 283
Bst2UI CCWGG 1 cut(s) 399
BstDEI CTNAG 3 cut(s) 174, 279, 383
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 2 cut(s) 211, 286
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 2 cut(s) 208, 283
BstMWI GCNNNNNNNGC 2 cut(s) 17, 76
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 2 cut(s) 119, 191
BtsCI GGATG 1 cut(s) 187
CviAII CATG 1 cut(s) 295
CviJI RGCY 7 cut(s) 8, 20, 79, 119, 191, 359, 378
CviKI_1 RGCY 7 cut(s) 8, 20, 79, 119, 191, 359, 378
DdeI CTNAG 3 cut(s) 174, 279, 383
DpnI GATC 2 cut(s) 210, 285
DpnII GATC 2 cut(s) 208, 283
DriI GACNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 189
Eam1105I GACNNNNNGTC 1 cut(s) 295
Eco147I AGGCCT 1 cut(s) 119
Eco81I CCTNAGG 1 cut(s) 279
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 397
EcoT22I ATGCAT 1 cut(s) 187
FaeI CATG 1 cut(s) 298
FaiI YATR 6 cut(s) 296, 307, 362, 391, 408, 413
FatI CATG 1 cut(s) 294
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 9, 21
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 9, 21
GluI GCNGC 2 cut(s) 9, 21
HaeIII GGCC 2 cut(s) 119, 191
Hin1II CATG 1 cut(s) 298
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 147, 244
Hpy188III TCNNGA 3 cut(s) 234, 281, 287
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 4 cut(s) 70, 92, 185, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 76
HpyF3I CTNAG 3 cut(s) 174, 279, 383
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 1 cut(s) 298
Kzo9I GATC 2 cut(s) 208, 283
LpnPI CCDG 7 cut(s) 101, 219, 266, 300, 329, 384, 411
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 172
MaeII ACGT 1 cut(s) 264
MalI GATC 2 cut(s) 210, 285
MboI GATC 2 cut(s) 208, 283
MboII GAAGA 1 cut(s) 115
MfeI CAATTG 1 cut(s) 335
MflI RGATCY 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 3 cut(s) 124, 213, 335
MluNI TGGCCA 1 cut(s) 191
MnlI CCTC 4 cut(s) 141, 288, 310, 316
Mox20I TGGCCA 1 cut(s) 191
Mph1103I ATGCAT 1 cut(s) 187
MscI TGGCCA 1 cut(s) 191
MseI TTAA 4 cut(s) 57, 123, 158, 426
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 2 cut(s) 17, 76
NdeII GATC 2 cut(s) 208, 283
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 285
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 1 cut(s) 298
PceI AGGCCT 1 cut(s) 119
PciI ACATGT 1 cut(s) 294
PkrI GCNGC 2 cut(s) 10, 22
PscI ACATGT 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 285
PsuI RGATCY 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 4 cut(s) 57, 123, 158, 426
SatI GCNGC 2 cut(s) 9, 21
Sau3AI GATC 2 cut(s) 208, 283
ScrFI CCNGG 1 cut(s) 399
SetI ASST 7 cut(s) 10, 111, 152, 267, 280, 367, 396
SfaNI GCATC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 365
Sse9I AATT 3 cut(s) 124, 213, 335
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 1 cut(s) 352
StuI AGGCCT 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 397
TaiI ACGT 1 cut(s) 267
TasI AATT 3 cut(s) 124, 213, 335
Tru1I TTAA 4 cut(s) 57, 123, 158, 426
Tru9I TTAA 4 cut(s) 57, 123, 158, 426
TseI GCWGC 2 cut(s) 8, 20
TspDTI ATGAA 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 113
XceI RCATGY 1 cut(s) 298
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.