Rh7CG399100

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
50969750 .. 50972628
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG399100.1

Sequence Viewer

Length: 393 bp
ATGGAGGTGTCAGAGAGGCTGGAGAGGGTGCAAAAGGCGTTGGAGAATGCTGTGGAGGATATGGACTTGATGGTGAGGCTTTTGGATGAGCTTGGTAAGCTTCAGAATCAGGAGCAGGAGTGTGACTTGAGTATGGTGGATGCCAACATTAGTAAGTTGATGCCGGAACTTGGGTTTGCGCCTGAGGATGAAGATAGGTGGGTGGCTTCATTTAGTAGTGGTTGGCAGATGAGGATGTCACTTGGGAAGATTTTGCTTCAGTGGGAGACGAGAGGCAGCAGCCAACCCAAGCAGATATTGATCAAGTGCGAAATGAGTGGGGGAAGTTTGTTGTCAACACATATGTGCATGAGCCATGAAGTAGCACGCATGTTGCTGGTCTATTTTTGCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.89

Weight (kDa)

4.73

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 86, 242
AfiI CCNNNNNNNGG 1 cut(s) 170
AleI CACNNNNGTG 1 cut(s) 343
AluBI AGCT 2 cut(s) 91, 100
AluI AGCT 2 cut(s) 91, 100
Alw26I GTCTC 1 cut(s) 260
ApeKI GCWGC 2 cut(s) 276, 279
AspLEI GCGC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 85
AxyI CCTNAGG 1 cut(s) 183
BbvI GCAGC 2 cut(s) 288, 291
BccI CCATC 1 cut(s) 64
BclI TGATCA 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 260
BisI GCNGC 2 cut(s) 277, 280
BlsI GCNGC 2 cut(s) 278, 281
BmsI GCATC 2 cut(s) 130, 150
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse21I CCTNAGG 1 cut(s) 183
Bse8I GATNNNNATC 1 cut(s) 299
BseGI GGATG 4 cut(s) 91, 145, 193, 240
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 174
BseXI GCAGC 2 cut(s) 288, 291
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 260
BsmBI CGTCTC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 175
BssMI GATC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 4 cut(s) 91, 145, 193, 240
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 300
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 373
BstV1I GCAGC 2 cut(s) 288, 291
Bsu36I CCTNAGG 1 cut(s) 183
BtsCI GGATG 4 cut(s) 91, 145, 193, 240
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 367
CfoI GCGC 1 cut(s) 181
CviAII CATG 3 cut(s) 349, 356, 370
CviJI RGCY 7 cut(s) 19, 79, 91, 100, 206, 282, 354
CviKI_1 RGCY 7 cut(s) 19, 79, 91, 100, 206, 282, 354
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
Eco57I CTGAAG 2 cut(s) 86, 242
Eco81I CCTNAGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 3 cut(s) 352, 359, 373
FaiI YATR 7 cut(s) 62, 134, 342, 344, 350, 357, 371
FatI CATG 3 cut(s) 348, 355, 369
FauNDI CATATG 1 cut(s) 342
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 277, 280
FokI GGATG 4 cut(s) 98, 152, 200, 247
Fsp4HI GCNGC 2 cut(s) 277, 280
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 277, 280
GsuI CTGGAG 1 cut(s) 41
HapII CCGG 1 cut(s) 164
HhaI GCGC 1 cut(s) 181
Hin1II CATG 3 cut(s) 352, 359, 373
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 164
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 13, 105
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 336
HpyCH4V TGCA 2 cut(s) 31, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 3 cut(s) 352, 359, 373
HspAI GCGC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 6 cut(s) 5, 95, 101, 177, 195, 362
Lsp1109I GCAGC 2 cut(s) 288, 291
LweI GCATC 2 cut(s) 130, 150
MaeIII GTNAC 2 cut(s) 122, 237
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 2 cut(s) 203, 259
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 7 cut(s) 9, 18, 49, 69, 178, 225, 266
MslI CAYNNNNRTG 1 cut(s) 343
MspI CCGG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeI CATATG 1 cut(s) 342
NdeII GATC 1 cut(s) 300
NlaIII CATG 3 cut(s) 352, 359, 373
NmuCI GTSAC 2 cut(s) 122, 237
NspI RCATGY 1 cut(s) 373
OliI CACNNNNGTG 1 cut(s) 343
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 2 cut(s) 278, 281
RseI CAYNNNNRTG 1 cut(s) 343
SatI GCNGC 2 cut(s) 277, 280
Sau3AI GATC 1 cut(s) 300
SetI ASST 4 cut(s) 9, 93, 102, 200
SfaNI GCATC 2 cut(s) 130, 150
SmiMI CAYNNNNRTG 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 2 cut(s) 122, 237
TseI GCWGC 2 cut(s) 276, 279
Tsp45I GTSAC 2 cut(s) 122, 237
TspDTI ATGAA 3 cut(s) 198, 204, 372
TspRI CASTG 1 cut(s) 266
XceI RCATGY 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.