MD01G1020500.v1.1

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000380
Physical Location & Seq
Forward (+)
8338421 .. 8344176
5756 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1020500.v1.1.491

Sequence Viewer

Length: 888 bp
ATGGGTGTCTCCAGGACATACGAGGGAAATTACTCCCAGTATATTCTGGCAAAGGCAGCATGGATTGAAACTCAAAATGCTGCTTGGGAGAAGCAACAGAGGGAAATCGAGCAGACAAAAGACTTGATACACAGGTTGGGTGCTGGAGCTAATTCTGGTCGTGCTTCTTCTGCTGAAAAGAAGCTGGAGAAACTTCAGGAAGATGATCTAGTGGAAAGGCCGTTCCAGAGGAAACAAATGAAGATCAGGTTTCCTGAGTGGGGACAAAGCGGAAGATTTGTTGCAATGATTAAGAATCTGGAATTTGGCTTTGGGGATAAGGCCCTACTTAACAGGGCAAATCTTACAATTGAAAGGGGAGAGAAAATTGCGATTATTGGCCCAAATGGTTGTGGAAAGAGTACTTTGCTGAAACTAATAATGGGTTTACAACAGCCAATGGCAGGTGAAGTTGAGATTGGGGAGAATAATGTCCTACCGAACTACTTTGAGCAAAATCAGGCCGAGGCACTTGATTTAAATAAAACAGTGCTTGAGACAGTAGAAGAAGCTGCAGAGGACTGGAGACTTGATGATATAAAGGGTCTCCTTGGGCGTTGTAATTTCAATCTGATATGCTTGATAGAAAGGAGAAATTTTGGGAAGATCTTGGAGACTTGGTGCAAGGAAATTGCTCAGACGGAGAAGTATTATCTAGAGAAGAATCTTGATGCTAGGGAAAGAGAGCTCAAGCGCGAGGCAGAGATTGAAGAAAAGGCTCCTAAAGTGAAAGCCAAATCAAAGATGTCTAAGGCTGAAAAGGAAGCTCGGAAGAAGCAAAAGATGCAGGCGTTTCAGCAAGCAAAGGCCAAATCAAAAGGAACAAAGAAGGCCAAGAGATGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

296

Amino Acids

33.84

Weight (kDa)

9.32

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran_Xtn PF12848 2 - 84 1e-18 ABC transporter
ABC_tran PF00005 110 - 174 1.4e-14 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 434
Acc36I ACCTGC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 879
AccII CGCG 1 cut(s) 735
AciI CCGC 1 cut(s) 270
AcsI RAATTY 2 cut(s) 302, 634
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 3 cut(s) 260, 443, 879
AgsI TTSAA 4 cut(s) 68, 353, 607, 749
AjnI CCWGG 1 cut(s) 11
AjuI GAANNNNNNNTTGG 4 cut(s) 294, 326, 441, 473
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 5 cut(s) 149, 184, 551, 727, 806
AluI AGCT 5 cut(s) 149, 184, 551, 727, 806
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 5 cut(s) 13, 530, 559, 590, 647
AoxI GGCC 6 cut(s) 218, 321, 379, 501, 846, 870
ApeKI GCWGC 3 cut(s) 56, 80, 551
ApoI RAATTY 2 cut(s) 302, 634
AspLEI GCGC 1 cut(s) 735
AspS9I GGNCC 2 cut(s) 322, 380
AsuHPI GGTGA 1 cut(s) 458
BaeI ACNNNNGTAYC 2 cut(s) 119, 152
BanII GRGCYC 1 cut(s) 729
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 3 cut(s) 67, 68, 538
BccI CCATC 1 cut(s) 873
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 5 cut(s) 13, 530, 559, 590, 647
BfaI CTAG 3 cut(s) 209, 695, 714
BfmI CTRYAG 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 434
BglII AGATCT 1 cut(s) 645
BisI GCNGC 3 cut(s) 57, 81, 552
BlsI GCNGC 3 cut(s) 58, 82, 553
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 322, 380
BmiI GGNNCC 1 cut(s) 759
BmrFI CCNGG 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 700, 813
BmuI ACTGGG 1 cut(s) 31
BpmI CTGGAG 3 cut(s) 165, 206, 583
BpuEI CTTGAG 2 cut(s) 554, 713
BsaI GGTCTC 1 cut(s) 590
BsaJI CCNNGG 2 cut(s) 504, 589
BsaXI ACNNNNNCTCC 2 cut(s) 644, 674
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 443, 879
Bse1I ACTGG 2 cut(s) 37, 566
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 504, 589
BseLI CCNNNNNNNGG 3 cut(s) 260, 443, 879
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 246, 689
BseNI ACTGG 2 cut(s) 37, 566
BseXI GCAGC 3 cut(s) 67, 68, 538
Bsh1236I CGCG 1 cut(s) 735
BshFI GGCC 6 cut(s) 220, 323, 381, 503, 848, 872
BsiHKAI GWGCWC 1 cut(s) 729
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 3 cut(s) 260, 443, 879
BsmAI GTCTC 5 cut(s) 13, 530, 559, 590, 647
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 6 cut(s) 220, 323, 381, 503, 848, 872
Bso31I GGTCTC 1 cut(s) 590
Bsp1286I GDGCHC 1 cut(s) 729
Bsp143I GATC 3 cut(s) 205, 243, 645
BspACI CCGC 1 cut(s) 270
BspANI GGCC 6 cut(s) 220, 323, 381, 503, 848, 872
BspCNI CTCAG 2 cut(s) 247, 688
BspFNI CGCG 1 cut(s) 735
BspLI GGNNCC 1 cut(s) 759
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 590
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 2 cut(s) 37, 566
BssECI CCNNGG 2 cut(s) 504, 589
BssMI GATC 3 cut(s) 205, 243, 645
BssT1I CCWWGG 1 cut(s) 589
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 529, 541
BstAPI GCANNNNNTGC 1 cut(s) 823
BstC8I GCNNGC 2 cut(s) 828, 840
BstDEI CTNAG 3 cut(s) 255, 675, 789
BstFNI CGCG 1 cut(s) 735
BstHHI GCGC 1 cut(s) 735
BstKTI GATC 3 cut(s) 208, 246, 648
BstMAI GTCTC 5 cut(s) 13, 530, 559, 590, 647
BstMBI GATC 3 cut(s) 205, 243, 645
BstMWI GCNNNNNNNGC 3 cut(s) 56, 170, 823
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 552
BstUI CGCG 1 cut(s) 735
BstV1I GCAGC 3 cut(s) 67, 68, 538
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BsuRI GGCC 6 cut(s) 220, 323, 381, 503, 848, 872
BtsIMutI CAGTG 1 cut(s) 534
BveI ACCTGC 1 cut(s) 434
Cac8I GCNNGC 2 cut(s) 828, 840
CfoI GCGC 1 cut(s) 735
Cfr13I GGNCC 2 cut(s) 322, 380
Csp6I GTAC 1 cut(s) 402
CviAII CATG 1 cut(s) 60
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 3 cut(s) 255, 675, 789
DpnI GATC 3 cut(s) 207, 245, 647
DpnII GATC 3 cut(s) 205, 243, 645
DraI TTTAAA 1 cut(s) 519
Ecl136II GAGCTC 1 cut(s) 727
Eco130I CCWWGG 1 cut(s) 589
Eco24I GRGCYC 1 cut(s) 729
Eco31I GGTCTC 1 cut(s) 590
Eco53kI GAGCTC 1 cut(s) 727
Eco57I CTGAAG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 727
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 589
FaeI CATG 1 cut(s) 63
FaiI YATR 5 cut(s) 19, 42, 61, 578, 616
FaqI GGGAC 1 cut(s) 276
FatI CATG 1 cut(s) 59
Fnu4HI GCNGC 3 cut(s) 57, 81, 552
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 3 cut(s) 57, 81, 552
FspBI CTAG 3 cut(s) 209, 695, 714
GlaI GCGC 1 cut(s) 734
GluI GCNGC 3 cut(s) 57, 81, 552
GsuI CTGGAG 3 cut(s) 165, 206, 583
HaeIII GGCC 6 cut(s) 220, 323, 381, 503, 848, 872
HhaI GCGC 1 cut(s) 735
Hin1II CATG 1 cut(s) 63
Hin6I GCGC 1 cut(s) 733
HinP1I GCGC 1 cut(s) 733
HinfI GANTC 2 cut(s) 295, 703
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 3 cut(s) 612, 678, 810
Hpy188III TCNNGA 6 cut(s) 197, 226, 254, 299, 695, 707
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 1 cut(s) 862
HpyCH4III ACNGT 2 cut(s) 529, 541
HpyCH4V TGCA 4 cut(s) 284, 554, 663, 826
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 170, 823
HpyF3I CTNAG 3 cut(s) 255, 675, 789
Hsp92II CATG 1 cut(s) 63
HspAI GCGC 1 cut(s) 733
Kzo9I GATC 3 cut(s) 205, 243, 645
LmnI GCTCC 2 cut(s) 146, 763
Lsp1109I GCAGC 3 cut(s) 67, 68, 538
LweI GCATC 2 cut(s) 700, 813
MaeI CTAG 3 cut(s) 209, 695, 714
MalI GATC 3 cut(s) 207, 245, 647
MboI GATC 3 cut(s) 205, 243, 645
MboII GAAGA 9 cut(s) 159, 212, 253, 285, 557, 655, 712, 761, 823
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 1 cut(s) 729
MluCI AATT 8 cut(s) 28, 151, 302, 348, 366, 601, 634, 669
MnlI CCTC 6 cut(s) 16, 93, 222, 499, 550, 730
MseI TTAA 4 cut(s) 291, 330, 518, 886
MspR9I CCNGG 1 cut(s) 13
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 13
MvnI CGCG 1 cut(s) 735
MwoI GCNNNNNNNGC 3 cut(s) 56, 170, 823
NdeII GATC 3 cut(s) 205, 243, 645
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 759
NmeAIII GCCGAG 1 cut(s) 529
PaqCI CACCTGC 1 cut(s) 434
PfeI GAWTC 2 cut(s) 295, 703
PflMI CCANNNNNTGG 1 cut(s) 879
PfoI TCCNGGA 1 cut(s) 11
PkrI GCNGC 3 cut(s) 58, 82, 553
Psp124BI GAGCTC 1 cut(s) 729
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 759
PspPI GGNCC 2 cut(s) 322, 380
PstI CTGCAG 1 cut(s) 556
PsuI RGATCY 1 cut(s) 645
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SacI GAGCTC 1 cut(s) 729
SaqAI TTAA 4 cut(s) 291, 330, 518, 886
SatI GCNGC 3 cut(s) 57, 81, 552
Sau3AI GATC 3 cut(s) 205, 243, 645
Sau96I GGNCC 2 cut(s) 322, 380
ScaI AGTACT 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 729
SetI ASST 8 cut(s) 137, 151, 186, 251, 448, 553, 729, 808
SfaNI GCATC 2 cut(s) 700, 813
SfcI CTRYAG 1 cut(s) 552
SmiI ATTTAAAT 1 cut(s) 519
SmlI CTYRAG 2 cut(s) 533, 728
SmoI CTYRAG 2 cut(s) 533, 728
Sse9I AATT 8 cut(s) 28, 151, 302, 348, 366, 601, 634, 669
SsiI CCGC 1 cut(s) 270
SspMI CTAG 3 cut(s) 209, 695, 714
SstI GAGCTC 1 cut(s) 729
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 1 cut(s) 589
SwaI ATTTAAAT 1 cut(s) 519
TaaI ACNGT 2 cut(s) 529, 541
TaqI TCGA 1 cut(s) 108
TasI AATT 8 cut(s) 28, 151, 302, 348, 366, 601, 634, 669
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 2 cut(s) 295, 703
Tru1I TTAA 4 cut(s) 291, 330, 518, 886
Tru9I TTAA 4 cut(s) 291, 330, 518, 886
TscAI CASTG 1 cut(s) 534
TseI GCWGC 3 cut(s) 56, 80, 551
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 695
TspRI CASTG 1 cut(s) 534
Van91I CCANNNNNTGG 1 cut(s) 879
XapI RAATTY 2 cut(s) 302, 634
XbaI TCTAGA 1 cut(s) 694
XspI CTAG 3 cut(s) 209, 695, 714
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.