Rmu_sc0011574.1_g000003

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011574.1
OG0000380
Physical Location & Seq
Reverse (-)
8239 .. 10899
2661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011574.1_g000003.1.cds

Sequence Viewer

Length: 585 bp
atggcacgtcaggtgaagattacactcgacgactctgatgatgaagaagatgaagccgacaatcgcttggccgacgatgaagaagatgagatcacaacaatgatgaagaggatgaagctgaaggtcaagaaggagtccgcctccaatccgtcgcgtaactggcgcgatgacgccgtcagaggaagaagagggttgctagctacaaggtgtacactgtggagggaagctgaaagggactctcaggaagagctattatggactgcttttaaggaggagatggaggtatcagagagactggagagggtgcaaaaggcgttggagagtgctgtggaggatatgaacttgatggggaggcttttggatgagcttggtaagcttcagaatcaggcgcaggagtgtgacctgagtatggtggatgcaaagatttgtaagttgatgcccgaatttgggtttgcacccgacgatggggattggttggtggcttcatttagtagtggttggcagatgaggatgtcacttgggaagattttgcttcagcgtgttatcgccgaaaagttgtcatggtggattgttattagtggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

194

Amino Acids

22.42

Weight (kDa)

4.67

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 154, 165
AciI CCGC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 443
AcuI CTGAAG 3 cut(s) 140, 362, 518
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 5 cut(s) 409, 446, 447, 464, 465
AjiI CACGTC 1 cut(s) 8
AluBI AGCT 6 cut(s) 118, 200, 227, 250, 367, 376
AluI AGCT 6 cut(s) 118, 200, 227, 250, 367, 376
Alw26I GTCTC 1 cut(s) 286
AoxI GGCC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 443
AspLEI GCGC 2 cut(s) 165, 391
AsuHPI GGTGA 1 cut(s) 25
AsuNHI GCTAGC 1 cut(s) 196
BccI CCATC 3 cut(s) 271, 340, 458
BceAI ACGGC 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 1 cut(s) 197
BmgBI CACGTC 1 cut(s) 8
BmsI GCATC 2 cut(s) 406, 426
BmtI GCTAGC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpmI CTGGAG 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 171
Bsc4I CCNNNNNNNGG 5 cut(s) 409, 446, 447, 464, 465
Bse1I ACTGG 2 cut(s) 164, 300
BseGI GGATG 4 cut(s) 117, 367, 421, 516
BseLI CCNNNNNNNGG 5 cut(s) 409, 446, 447, 464, 465
BseMII CTCAG 2 cut(s) 254, 395
BseNI ACTGG 2 cut(s) 164, 300
BseRI GAGGAG 1 cut(s) 287
Bsh1236I CGCG 2 cut(s) 154, 165
BshFI GGCC 1 cut(s) 71
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 5 cut(s) 409, 446, 447, 464, 465
BsmAI GTCTC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 209
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 1 cut(s) 138
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 253, 396
BspFNI CGCG 2 cut(s) 154, 165
BspOI GCTAGC 1 cut(s) 200
BspQI GCTCTTC 1 cut(s) 240
BsrGI TGTACA 1 cut(s) 209
BsrI ACTGG 2 cut(s) 164, 300
BssMI GATC 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 216
Bst6I CTCTTC 3 cut(s) 101, 181, 240
BstACI GRCGYC 1 cut(s) 171
BstAUI TGTACA 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 240, 404
BstF5I GGATG 4 cut(s) 117, 367, 421, 516
BstFNI CGCG 2 cut(s) 154, 165
BstHHI GCGC 2 cut(s) 165, 391
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 160, 373
BstUI CGCG 2 cut(s) 154, 165
BsuRI GGCC 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 180
BtrI CACGTC 1 cut(s) 8
BtsCI GGATG 4 cut(s) 117, 367, 421, 516
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 2 cut(s) 165, 391
CseI GACGC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 210
CviAII CATG 1 cut(s) 561
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 2 cut(s) 240, 404
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 3 cut(s) 101, 181, 240
EarI CTCTTC 3 cut(s) 101, 181, 240
EciI GGCGGA 1 cut(s) 127
Eco57I CTGAAG 3 cut(s) 140, 362, 518
FaeI CATG 1 cut(s) 564
FaiI YATR 4 cut(s) 256, 338, 410, 562
FaqI GGGAC 1 cut(s) 248
FatI CATG 1 cut(s) 560
FokI GGATG 4 cut(s) 124, 374, 428, 523
FspBI CTAG 1 cut(s) 197
GlaI GCGC 2 cut(s) 164, 390
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 71
HgaI GACGC 1 cut(s) 179
HhaI GCGC 2 cut(s) 165, 391
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 1 cut(s) 564
Hin6I GCGC 2 cut(s) 163, 389
HinP1I GCGC 2 cut(s) 163, 389
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 4 cut(s) 32, 134, 236, 382
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 210, 212
Hpy188I TCNGA 4 cut(s) 37, 179, 289, 381
Hpy188III TCNNGA 2 cut(s) 127, 242
Hpy8I GTNNAC 2 cut(s) 210, 212
Hpy99I CGWCG 4 cut(s) 32, 77, 154, 464
HpyAV CCTTC 2 cut(s) 115, 124
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 3 cut(s) 307, 419, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 373
HpyF3I CTNAG 2 cut(s) 240, 404
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 1 cut(s) 564
HspAI GCGC 2 cut(s) 163, 389
Kzo9I GATC 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 240
LpnPI CCDG 6 cut(s) 145, 227, 281, 371, 377, 416
LweI GCATC 2 cut(s) 406, 426
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 3 cut(s) 155, 398, 513
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MluCI AATT 1 cut(s) 443
MlyI GAGTC 3 cut(s) 26, 143, 230
MmeI TCCRAC 1 cut(s) 297
MseI TTAA 2 cut(s) 267, 583
MslI CAYNNNNRTG 1 cut(s) 98
MvnI CGCG 2 cut(s) 154, 165
MwoI GCNNNNNNNGC 2 cut(s) 160, 373
NdeII GATC 1 cut(s) 90
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 1 cut(s) 564
NmuCI GTSAC 2 cut(s) 398, 513
PciSI GCTCTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 382
PflFI GACNNNGTC 1 cut(s) 173
PleI GAGTC 3 cut(s) 26, 142, 230
PpsI GAGTC 3 cut(s) 26, 142, 230
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 98
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 2 cut(s) 267, 583
Sau3AI GATC 1 cut(s) 90
SchI GAGTC 3 cut(s) 26, 143, 230
SfaNI GCATC 2 cut(s) 406, 426
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 1 cut(s) 443
SsiI CCGC 1 cut(s) 138
SspMI CTAG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 443
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 2 cut(s) 267, 583
Tru9I TTAA 2 cut(s) 267, 583
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 2 cut(s) 398, 513
Tsp45I GTSAC 2 cut(s) 398, 513
TspDTI ATGAA 7 cut(s) 57, 66, 93, 119, 128, 353, 474
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 219
Tth111I GACNNNGTC 1 cut(s) 173
XapI RAATTY 1 cut(s) 443
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.