Rroxscaffold_2G00144860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000380
Physical Location & Seq
Forward (+)
82758424 .. 82762560
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144860.1

Sequence Viewer

Length: 426 bp
ATGATGAAGCTTGAAAAGGATGCCGAGGACTCAAGGATTTCACCCACAGATTTTCGTAAGAAGCTGCATGTAAGCTGGTGCAAATTTGAGGTGATCGCACTACAAAAAAAAATTGCAATAGCCACGGCGCCCTGCCGTAGCGAAAAGTTGTTTTGCCGTCGCAAAAAAGCATTTGCGACGGCTCTGCGACGGCAAAGCTTCGACGCCGTTGGTGGCGTCGCTAATATCTTTAGCCACGGCAAAATGCCGTCGCAGACCACTTTTGCGACGGCAAAGAGCTTTGCGACACTTACTCTGCGACGGTTTCATGCTACCCCTAATGCCGTGTTATGGAGCAAAGTAGAAGAAAAGAAGCCAAATCAGCAAATCTTCCTGTGCAGATCAGTCAAATTCAAAATGAAACTGAGAACAGCTCAGAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.13

Weight (kDa)

10.4

Isoelectric Point (pI)

66.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AcsI RAATTY 2 cut(s) 83, 389
AcyI GRCGYC 3 cut(s) 128, 204, 216
AfiI CCNNNNNNNGG 1 cut(s) 330
AgsI TTSAA 2 cut(s) 14, 394
AluBI AGCT 6 cut(s) 10, 64, 75, 198, 279, 413
AluI AGCT 6 cut(s) 10, 64, 75, 198, 279, 413
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 2 cut(s) 83, 389
AspLEI GCGC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 33, 103
BanI GGYRCC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 51
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BfoI RGCGCY 1 cut(s) 131
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 129
BmsI GCATC 1 cut(s) 10
BplI GAGNNNNNCTC 1 cut(s) 397
BpuEI CTTGAG 1 cut(s) 16
BsaHI GRCGYC 3 cut(s) 128, 204, 216
BsaJI CCNNGG 3 cut(s) 24, 123, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 330
BseDI CCNNGG 3 cut(s) 24, 123, 235
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 51
BsgI GTGCAG 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 330
Bsp143I GATC 2 cut(s) 93, 380
BspCNI CTCAG 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 127
BssECI CCNNGG 3 cut(s) 24, 123, 235
BssMI GATC 2 cut(s) 93, 380
BssNI GRCGYC 3 cut(s) 128, 204, 216
Bst4CI ACNGT 1 cut(s) 303
BstACI GRCGYC 3 cut(s) 128, 204, 216
BstDEI CTNAG 2 cut(s) 404, 414
BstDSI CCRYGG 2 cut(s) 123, 235
BstF5I GGATG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 2 cut(s) 96, 383
BstMBI GATC 2 cut(s) 93, 380
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 51
BtgI CCRYGG 2 cut(s) 123, 235
BtsCI GGATG 1 cut(s) 25
CfoI GCGC 1 cut(s) 130
CseI GACGC 2 cut(s) 205, 212
CviAII CATG 2 cut(s) 68, 308
DdeI CTNAG 2 cut(s) 404, 414
DinI GGCGCC 1 cut(s) 129
DpnI GATC 2 cut(s) 95, 382
DpnII GATC 2 cut(s) 93, 380
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
FaeI CATG 2 cut(s) 71, 311
FaiI YATR 3 cut(s) 69, 309, 331
FatI CATG 2 cut(s) 67, 307
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 65
GlaI GCGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 131
HgaI GACGC 2 cut(s) 205, 212
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 3 cut(s) 128, 204, 216
Hin1II CATG 2 cut(s) 71, 311
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HindIII AAGCTT 2 cut(s) 8, 196
HinfI GANTC 1 cut(s) 29
HphI GGTGA 2 cut(s) 33, 103
Hpy188I TCNGA 1 cut(s) 417
Hpy99I CGWCG 8 cut(s) 162, 181, 192, 206, 221, 253, 271, 303
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4V TGCA 4 cut(s) 67, 81, 116, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 2 cut(s) 404, 414
Hsp92I GRCGYC 3 cut(s) 128, 204, 216
Hsp92II CATG 2 cut(s) 71, 311
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 93, 380
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 3 cut(s) 61, 145, 386
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 10
MalI GATC 2 cut(s) 95, 382
MboI GATC 2 cut(s) 93, 380
MboII GAAGA 2 cut(s) 356, 361
MluCI AATT 3 cut(s) 83, 111, 389
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 2 cut(s) 19, 82
MwoI GCNNNNNNNGC 1 cut(s) 361
NarI GGCGCC 1 cut(s) 128
NdeII GATC 2 cut(s) 93, 380
NlaIII CATG 2 cut(s) 71, 311
NlaIV GGNNCC 1 cut(s) 129
NmeAIII GCCGAG 1 cut(s) 49
NspI RCATGY 1 cut(s) 71
PkrI GCNGC 1 cut(s) 66
PleI GAGTC 1 cut(s) 23
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 129
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 2 cut(s) 93, 380
SchI GAGTC 1 cut(s) 23
SetI ASST 7 cut(s) 12, 66, 77, 93, 200, 281, 415
SfaNI GCATC 1 cut(s) 10
SfoI GGCGCC 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 3 cut(s) 83, 111, 389
SspDI GGCGCC 1 cut(s) 127
TaaI ACNGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 201
TasI AATT 3 cut(s) 83, 111, 389
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 20, 296, 413
XapI RAATTY 2 cut(s) 83, 389
XceI RCATGY 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.