Rh2AG263700

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000380
Physical Location & Seq
Forward (+)
30424234 .. 30428138
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG263700.1

Sequence Viewer

Length: 657 bp
ATGGTGGATGCGAAGATTAGTAAGTTGATGCCGGATCTTGGGTTTGCGCCCAACGATGGGGACAGGTTGATGGCTTCGTTTAGTAGTGGTTGGCAGATGAGGATGTCACATGGCAAGATTTTGCTTCAGCTGGAGAAACTTCAGGAAGAGGATCTTGTTGAAAGGCCGTTCCAGAGGAAACAGATGAGGATCAGGTTTCCTGAACGGGGAAGAAGTGGAAGATTTGTTGCAACACTTAAGAATCTGGACGCTGGCTTTGGAGATGAGGCTGAGGCACTTGATTTAGATAAAACAGTGCTTGAGACAGTAGAAGAAGCAGCTGAGGATTGGAGACTTGATGATATAAAGGGTCTCCTTAGTCGTTGTAATTTCAAAGCAGATATGCTTGATAGAAAGGTTTCCCTCTTAAGTGGTGGTGAGAAGGCACGCCTTGCCTTCTGCAAGTTCATGGTAACCCCATCTACTCTGCTAGTTCTGGATGAACCGACAAATCACATGGACATTCCTTCAAAAGAGATGCTTGAGGAGGAAATAAATGAGTACAAAGGCACTGTTATCACAGTTTCTCGTGACCCATACTTTATAAAGAAAGTAGTTAATAGAGTAGTGGAAGTTAAAGACAGAAGATTGCAAGATTATGCAGGCAATTACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

218

Amino Acids

24.98

Weight (kDa)

5.45

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 93 - 164 2.5e-09 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AclWI GGATC 3 cut(s) 42, 159, 197
AcuI CTGAAG 2 cut(s) 110, 125
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 4 cut(s) 38, 56, 57, 206
AflII CTTAAG 2 cut(s) 236, 406
AgsI TTSAA 3 cut(s) 161, 373, 510
AluBI AGCT 2 cut(s) 130, 320
AluI AGCT 2 cut(s) 130, 320
Alw26I GTCTC 3 cut(s) 296, 325, 356
AlwI GGATC 3 cut(s) 42, 159, 197
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 317
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
Asp700I GAANNNNTTC 1 cut(s) 397
AspLEI GCGC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 428
BauI CACGAG 1 cut(s) 567
BbvCI CCTCAGC 2 cut(s) 270, 321
BbvI GCAGC 1 cut(s) 329
BccI CCATC 3 cut(s) 50, 64, 466
BceAI ACGGC 1 cut(s) 151
BcoDI GTCTC 3 cut(s) 296, 325, 356
BfaI CTAG 1 cut(s) 470
BfrI CTTAAG 2 cut(s) 236, 406
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmsI GCATC 2 cut(s) 18, 507
BpmI CTGGAG 1 cut(s) 152
Bpu10I CCTNAGC 2 cut(s) 270, 321
BpuEI CTTGAG 2 cut(s) 320, 542
BsaBI GATNNNNATC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 356
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 56, 57, 206
Bse8I GATNNNNATC 1 cut(s) 188
BseGI GGATG 3 cut(s) 13, 108, 484
BseJI GATNNNNATC 1 cut(s) 188
BseLI CCNNNNNNNGG 4 cut(s) 38, 56, 57, 206
BseMII CTCAG 2 cut(s) 261, 312
BseRI GAGGAG 1 cut(s) 539
BseXI GCAGC 1 cut(s) 329
BshFI GGCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 4 cut(s) 38, 56, 57, 206
BsmAI GTCTC 3 cut(s) 296, 325, 356
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 1 cut(s) 166
Bso31I GGTCTC 1 cut(s) 356
Bsp143I GATC 3 cut(s) 34, 151, 189
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 2 cut(s) 262, 313
BspPI GGATC 3 cut(s) 42, 159, 197
BspTI CTTAAG 2 cut(s) 236, 406
BspTNI GGTCTC 1 cut(s) 356
BssMI GATC 3 cut(s) 34, 151, 189
BssSI CACGAG 1 cut(s) 567
Bst2BI CACGAG 1 cut(s) 567
Bst4CI ACNGT 4 cut(s) 295, 307, 553, 562
Bst6I CTCTTC 1 cut(s) 141
BstAFI CTTAAG 2 cut(s) 236, 406
BstAPI GCANNNNNTGC 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 253, 427, 643
BstDEI CTNAG 3 cut(s) 270, 321, 356
BstEII GGTNACC 1 cut(s) 451
BstF5I GGATG 3 cut(s) 13, 108, 484
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 3 cut(s) 37, 154, 192
BstMAI GTCTC 3 cut(s) 296, 325, 356
BstMBI GATC 3 cut(s) 34, 151, 189
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstPI GGTNACC 1 cut(s) 451
BstV1I GCAGC 1 cut(s) 329
BstX2I RGATCY 2 cut(s) 34, 151
BstYI RGATCY 2 cut(s) 34, 151
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 3 cut(s) 13, 108, 484
BtsIMutI CAGTG 2 cut(s) 300, 549
Cac8I GCNNGC 3 cut(s) 253, 427, 643
CfoI GCGC 1 cut(s) 49
CseI GACGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 541
CviAII CATG 3 cut(s) 110, 448, 496
CviJI RGCY 6 cut(s) 74, 130, 166, 255, 269, 320
CviKI_1 RGCY 6 cut(s) 74, 130, 166, 255, 269, 320
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 3 cut(s) 270, 321, 356
DpnI GATC 3 cut(s) 36, 153, 191
DpnII GATC 3 cut(s) 34, 151, 189
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 356
Eco57I CTGAAG 2 cut(s) 110, 125
Eco91I GGTNACC 1 cut(s) 451
EcoO65I GGTNACC 1 cut(s) 451
FaeI CATG 3 cut(s) 113, 451, 499
FaiI YATR 8 cut(s) 111, 344, 383, 449, 497, 577, 584, 639
FalI AAGNNNNNCTT 4 cut(s) 138, 170, 504, 536
FaqI GGGAC 1 cut(s) 74
FatI CATG 3 cut(s) 109, 447, 495
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 3 cut(s) 20, 115, 491
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 470
GlaI GCGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 49
Hin1II CATG 3 cut(s) 113, 451, 499
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 1 cut(s) 241
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 428
Hpy188III TCNNGA 6 cut(s) 143, 172, 200, 245, 476, 569
HpyAV CCTTC 3 cut(s) 415, 445, 516
HpyCH4III ACNGT 4 cut(s) 295, 307, 553, 562
HpyCH4V TGCA 4 cut(s) 230, 441, 631, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 3 cut(s) 270, 321, 356
Hsp92II CATG 3 cut(s) 113, 451, 499
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 3 cut(s) 34, 151, 189
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 2 cut(s) 18, 507
MaeI CTAG 1 cut(s) 470
MaeIII GTNAC 3 cut(s) 105, 451, 569
MalI GATC 3 cut(s) 36, 153, 191
MboI GATC 3 cut(s) 34, 151, 189
MboII GAAGA 6 cut(s) 25, 158, 222, 231, 323, 636
MflI RGATCY 2 cut(s) 34, 151
MluCI AATT 3 cut(s) 367, 646, 652
MroXI GAANNNNTTC 1 cut(s) 397
MseI TTAA 4 cut(s) 237, 407, 597, 615
MspA1I CMGCKG 2 cut(s) 130, 320
MspCI CTTAAG 2 cut(s) 236, 406
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 431
NdeII GATC 3 cut(s) 34, 151, 189
NlaIII CATG 3 cut(s) 113, 451, 499
NmuCI GTSAC 2 cut(s) 105, 569
PdmI GAANNNNTTC 1 cut(s) 397
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 319
PsiI TTATAA 1 cut(s) 584
PspEI GGTNACC 1 cut(s) 451
PsuI RGATCY 2 cut(s) 34, 151
PvuII CAGCTG 2 cut(s) 130, 320
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
SaqAI TTAA 4 cut(s) 237, 407, 597, 615
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 3 cut(s) 34, 151, 189
SetI ASST 5 cut(s) 68, 132, 197, 322, 399
SfaNI GCATC 2 cut(s) 18, 507
SmlI CTYRAG 4 cut(s) 236, 299, 406, 521
SmoI CTYRAG 4 cut(s) 236, 299, 406, 521
Sse9I AATT 3 cut(s) 367, 646, 652
SspMI CTAG 1 cut(s) 470
TaaI ACNGT 4 cut(s) 295, 307, 553, 562
TasI AATT 3 cut(s) 367, 646, 652
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 4 cut(s) 237, 407, 597, 615
Tru9I TTAA 4 cut(s) 237, 407, 597, 615
TscAI CASTG 2 cut(s) 300, 556
TseFI GTSAC 2 cut(s) 105, 569
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 2 cut(s) 105, 569
TspDTI ATGAA 2 cut(s) 436, 495
TspRI CASTG 2 cut(s) 300, 556
Vha464I CTTAAG 2 cut(s) 236, 406
XmnI GAANNNNTTC 1 cut(s) 397
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.