Rmu_sc0010198.1_g000002

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010198.1
OG0000380
Physical Location & Seq
Reverse (-)
14866 .. 21458
6593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010198.1_g000002.1.cds

Sequence Viewer

Length: 582 bp
atggcaaaaatccccagcggggcggagctccattggatacccgcccctaatggggggagaattaggggacaaatggggaatggggatggggatccccaatccccgctatctaagattggggatggggcggggatgaatggagaggatggtggtgaactctcaattggtgaaaatatgatagctgctgctggggctgccacagccatttcaacaaatccattgtgggttgttaagacaagactgcaactgacatttggaatatcagagtttgaaaacaatgagaacgtgtcatcagtacctcaagatccagaccacatatcctctacatatcaagttgacaaggagggtgcagaacacttggacctggaaaagcaggaagccataggtgtgcttgatggctgtcacagattataccgtcctgggactcactgttttaatgacgcggggacataccctataatgtctcggcctctgggggaatcacatgttgagactcacatatttaatatcgcgggtgcacaagtgacaccaacatctcatattggaatgctacagcagggtcaacgcagctatgagggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 SF1-HH

Protein Analysis

193

Amino Acids

20.52

Weight (kDa)

4.93

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 443, 512
AciI CCGC 7 cut(s) 18, 23, 42, 104, 128, 443, 512
AclWI GGATC 3 cut(s) 86, 99, 299
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 4 cut(s) 19, 51, 52, 53
AflIII ACRYGT 2 cut(s) 285, 484
AgsI TTSAA 2 cut(s) 210, 272
AjnI CCWGG 2 cut(s) 363, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 3 cut(s) 28, 182, 570
AluI AGCT 3 cut(s) 28, 182, 570
Alw21I GWGCWC 2 cut(s) 30, 520
Alw26I GTCTC 2 cut(s) 468, 485
Alw44I GTGCAC 1 cut(s) 516
AlwI GGATC 3 cut(s) 86, 99, 299
AoxI GGCC 1 cut(s) 467
ApaLI GTGCAC 1 cut(s) 516
ApeKI GCWGC 4 cut(s) 182, 185, 194, 567
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 164, 179
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 520
BamHI GGATCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 30, 520
BbvI GCAGC 3 cut(s) 169, 172, 181
BccI CCATC 4 cut(s) 80, 116, 140, 389
BciT130I CCWGG 2 cut(s) 365, 420
BciVI GTATCC 1 cut(s) 30
BcoDI GTCTC 2 cut(s) 468, 485
BfaI CTAG 1 cut(s) 580
BfmI CTRYAG 1 cut(s) 551
BfuI GTATCC 1 cut(s) 30
BisI GCNGC 4 cut(s) 183, 186, 195, 568
BlsI GCNGC 4 cut(s) 184, 187, 196, 569
Bme1390I CCNGG 2 cut(s) 365, 420
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 365, 420
BpuEI CTTGAG 1 cut(s) 285
BsaBI GATNNNNATC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 419
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 51, 52, 53
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 2 cut(s) 365, 420
BseDI CCNNGG 1 cut(s) 419
BseGI GGATG 4 cut(s) 91, 127, 138, 151
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 4 cut(s) 19, 51, 52, 53
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 3 cut(s) 169, 172, 181
BseYI CCCAGC 2 cut(s) 14, 188
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 2 cut(s) 443, 512
BshFI GGCC 1 cut(s) 469
BsiHKAI GWGCWC 2 cut(s) 30, 520
BslFI GGGAC 3 cut(s) 81, 436, 460
BslI CCNNNNNNNGG 4 cut(s) 19, 51, 52, 53
BsmAI GTCTC 2 cut(s) 468, 485
BsmFI GGGAC 3 cut(s) 81, 436, 460
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 30, 520
Bsp143I GATC 2 cut(s) 91, 304
BspACI CCGC 7 cut(s) 18, 23, 42, 104, 128, 443, 512
BspANI GGCC 1 cut(s) 469
BspFNI CGCG 2 cut(s) 443, 512
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 3 cut(s) 86, 99, 299
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 2 cut(s) 91, 304
Bst2UI CCWGG 2 cut(s) 365, 420
Bst4CI ACNGT 2 cut(s) 416, 431
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 4 cut(s) 91, 127, 138, 151
BstFNI CGCG 2 cut(s) 443, 512
BstKTI GATC 2 cut(s) 94, 307
BstMAI GTCTC 2 cut(s) 468, 485
BstMBI GATC 2 cut(s) 91, 304
BstMWI GCNNNNNNNGC 4 cut(s) 191, 194, 200, 576
BstNI CCWGG 2 cut(s) 365, 420
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 363, 418
BstSFI CTRYAG 1 cut(s) 551
BstSLI GKGCMC 1 cut(s) 520
BstUI CGCG 2 cut(s) 443, 512
BstV1I GCAGC 3 cut(s) 169, 172, 181
BstX2I RGATCY 2 cut(s) 91, 304
BstYI RGATCY 2 cut(s) 91, 304
BsuI GTATCC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 469
BtsCI GGATG 4 cut(s) 91, 127, 138, 151
BtsIMutI CAGTG 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 296
CviAII CATG 1 cut(s) 485
CviJI RGCY 9 cut(s) 28, 182, 194, 203, 380, 399, 469, 570, 579
CviKI_1 RGCY 9 cut(s) 28, 182, 194, 203, 380, 399, 469, 570, 579
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 1 cut(s) 111
DpnI GATC 2 cut(s) 93, 306
DpnII GATC 2 cut(s) 91, 304
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 28
EcoRII CCWGG 2 cut(s) 363, 418
EcoT38I GRGCYC 1 cut(s) 30
FaeI CATG 1 cut(s) 488
FaqI GGGAC 3 cut(s) 81, 436, 460
FatI CATG 1 cut(s) 484
FauI CCCGC 6 cut(s) 11, 49, 111, 121, 436, 505
Fnu4HI GCNGC 4 cut(s) 183, 186, 195, 568
FokI GGATG 4 cut(s) 98, 134, 145, 158
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 4 cut(s) 183, 186, 195, 568
FspBI CTAG 1 cut(s) 580
GluI GCNGC 4 cut(s) 183, 186, 195, 568
GsaI CCCAGC 2 cut(s) 18, 192
HaeIII GGCC 1 cut(s) 469
HgaI GACGC 1 cut(s) 449
Hin1II CATG 1 cut(s) 488
HincII GTYRAC 2 cut(s) 337, 563
HindII GTYRAC 2 cut(s) 337, 563
HinfI GANTC 3 cut(s) 424, 479, 493
HphI GGTGA 2 cut(s) 164, 179
Hpy166II GTNNAC 4 cut(s) 155, 337, 518, 563
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 2 cut(s) 302, 308
Hpy8I GTNNAC 4 cut(s) 155, 337, 518, 563
HpyCH4III ACNGT 2 cut(s) 416, 431
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 244, 350, 518
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 194, 200, 576
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 1 cut(s) 488
Kzo9I GATC 2 cut(s) 91, 304
LmnI GCTCC 2 cut(s) 25, 33
Lsp1109I GCAGC 3 cut(s) 169, 172, 181
MaeI CTAG 1 cut(s) 580
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 401, 523
MalI GATC 2 cut(s) 93, 306
MboI GATC 2 cut(s) 91, 304
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 2 cut(s) 91, 304
MhlI GDGCHC 2 cut(s) 30, 520
MluCI AATT 2 cut(s) 60, 162
MlyI GAGTC 2 cut(s) 418, 487
MnlI CCTC 6 cut(s) 136, 309, 331, 337, 480, 568
MseI TTAA 3 cut(s) 231, 435, 504
MslI CAYNNNNRTG 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 18
MspR9I CCNGG 2 cut(s) 365, 420
MunI CAATTG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 2 cut(s) 365, 420
MvnI CGCG 2 cut(s) 443, 512
MwoI GCNNNNNNNGC 4 cut(s) 191, 194, 200, 576
NdeII GATC 2 cut(s) 91, 304
NlaIII CATG 1 cut(s) 488
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 1 cut(s) 445
NmuCI GTSAC 2 cut(s) 401, 523
NspI RCATGY 1 cut(s) 488
PciI ACATGT 1 cut(s) 484
PctI GAATGC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 479
PkrI GCNGC 4 cut(s) 184, 187, 196, 569
PleI GAGTC 2 cut(s) 418, 487
PpsI GAGTC 2 cut(s) 418, 487
PscI ACATGT 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 363, 418
PspFI CCCAGC 2 cut(s) 14, 188
PspGI CCWGG 2 cut(s) 363, 418
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 361
PsuI RGATCY 2 cut(s) 91, 304
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 3 cut(s) 231, 435, 504
SatI GCNGC 4 cut(s) 183, 186, 195, 568
Sau3AI GATC 2 cut(s) 91, 304
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 2 cut(s) 418, 487
ScrFI CCNGG 2 cut(s) 365, 420
SduI GDGCHC 2 cut(s) 30, 520
SetI ASST 7 cut(s) 30, 184, 288, 301, 366, 388, 572
SfcI CTRYAG 1 cut(s) 551
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 2 cut(s) 60, 162
SsiI CCGC 7 cut(s) 18, 23, 42, 104, 128, 443, 512
SspMI CTAG 1 cut(s) 580
SstI GAGCTC 1 cut(s) 30
StyD4I CCNGG 2 cut(s) 363, 418
TaaI ACNGT 2 cut(s) 416, 431
TaiI ACGT 1 cut(s) 288
TasI AATT 2 cut(s) 60, 162
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 3 cut(s) 231, 435, 504
Tru9I TTAA 3 cut(s) 231, 435, 504
TscAI CASTG 1 cut(s) 434
TseFI GTSAC 2 cut(s) 401, 523
TseI GCWGC 4 cut(s) 182, 185, 194, 567
Tsp45I GTSAC 2 cut(s) 401, 523
TspDTI ATGAA 1 cut(s) 149
TspRI CASTG 1 cut(s) 434
VneI GTGCAC 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 361
XceI RCATGY 1 cut(s) 488
XspI CTAG 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.