Rh6AG079600

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000380
Physical Location & Seq
Forward (+)
11591014 .. 11593907
2894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG079600.1

Sequence Viewer

Length: 351 bp
ATGACTACAAAGGATGATGGCGAACTCTCAATTGGTGAAAATATGATAGCTGCTGCTGGGCCTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACAAGACTGCAAACTTGGGTGGATCAAATTTCACAACTACTGAAATCTGGAATATCAGAGTTTGGAAACAATGAGAACGTGTCATCAGCACCTCAGGATCTAGACCACATGTCCTCTACATATCAAGTTGACAAGGAGGGTGCAGAACAATTGGAACTGGAAAAGCGGGAAGCCATAGGTGTGCTTGATGGCTGTCTCAGATTATACCTTCCTGGTTCTTATGTTATGCCTTGCTTGATTAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 SF1-HH

Protein Analysis

116

Amino Acids

12.69

Weight (kDa)

4.52

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 268
AclWI GGATC 2 cut(s) 132, 207
AcsI RAATTY 1 cut(s) 129
AflIII ACRYGT 2 cut(s) 180, 210
AgsI TTSAA 1 cut(s) 78
AhdI GACNNNNNGTC 1 cut(s) 211
AjnI CCWGG 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 2 cut(s) 132, 207
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 50, 53
ApoI RAATTY 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 195
BbvI GCAGC 2 cut(s) 37, 40
BccI CCATC 2 cut(s) 11, 284
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 1 cut(s) 203
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme1390I CCNGG 1 cut(s) 315
BmeRI GACNNNNNGTC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 315
Bse1I ACTGG 1 cut(s) 264
Bse21I CCTNAGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 209, 313
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 2 cut(s) 37, 40
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 264
BshFI GGCC 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 61
Bsp143I GATC 2 cut(s) 124, 199
BspACI CCGC 1 cut(s) 268
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 2 cut(s) 208, 312
BspPI GGATC 2 cut(s) 132, 207
BsrI ACTGG 1 cut(s) 264
BssMI GATC 2 cut(s) 124, 199
Bst2UI CCWGG 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 195, 299
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 2 cut(s) 127, 202
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 2 cut(s) 124, 199
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 37, 40
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
Bsu36I CCTNAGG 1 cut(s) 195
BsuRI GGCC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 1 cut(s) 211
CviJI RGCY 5 cut(s) 50, 61, 71, 275, 294
CviKI_1 RGCY 5 cut(s) 50, 61, 71, 275, 294
DdeI CTNAG 2 cut(s) 195, 299
DpnI GATC 2 cut(s) 126, 201
DpnII GATC 2 cut(s) 124, 199
DriI GACNNNNNGTC 1 cut(s) 211
Eam1105I GACNNNNNGTC 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 313
FaeI CATG 1 cut(s) 214
FaiI YATR 7 cut(s) 44, 212, 223, 278, 307, 324, 329
FatI CATG 1 cut(s) 210
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 51, 54
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 51, 54
FspBI CTAG 1 cut(s) 203
GluI GCNGC 2 cut(s) 51, 54
GsaI CCCAGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 1 cut(s) 214
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 160, 302
Hpy188III TCNNGA 3 cut(s) 150, 197, 203
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 112, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 195, 299
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 1 cut(s) 214
Kzo9I GATC 2 cut(s) 124, 199
LpnPI CCDG 7 cut(s) 42, 75, 135, 182, 245, 300, 327
Lsp1109I GCAGC 2 cut(s) 37, 40
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 180
MalI GATC 2 cut(s) 126, 201
MboI GATC 2 cut(s) 124, 199
MfeI CAATTG 2 cut(s) 30, 251
MflI RGATCY 1 cut(s) 199
MluCI AATT 3 cut(s) 30, 129, 251
MnlI CCTC 3 cut(s) 204, 226, 232
MseI TTAA 2 cut(s) 99, 342
MslI CAYNNNNRTG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 2 cut(s) 30, 251
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 2 cut(s) 124, 199
NlaIII CATG 1 cut(s) 214
NspI RCATGY 1 cut(s) 214
PciI ACATGT 1 cut(s) 210
PkrI GCNGC 2 cut(s) 52, 55
PscI ACATGT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 1 cut(s) 313
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 2 cut(s) 99, 342
SatI GCNGC 2 cut(s) 51, 54
Sau3AI GATC 2 cut(s) 124, 199
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 315
SetI ASST 5 cut(s) 52, 183, 196, 283, 312
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 3 cut(s) 30, 129, 251
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 313
TaiI ACGT 1 cut(s) 183
TasI AATT 3 cut(s) 30, 129, 251
Tru1I TTAA 2 cut(s) 99, 342
Tru9I TTAA 2 cut(s) 99, 342
TseI GCWGC 2 cut(s) 50, 53
XapI RAATTY 1 cut(s) 129
XbaI TCTAGA 1 cut(s) 202
XceI RCATGY 1 cut(s) 214
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.