Rmu_sc0004942.1_g000016

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004942.1
OG0000380
Physical Location & Seq
Forward (+)
56360 .. 62363
6004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004942.1_g000016.1.cds

Sequence Viewer

Length: 978 bp
atgatgaaggaggagtccgcctccaatcggtcgcgtaccacccgcgacgacgccattagtgacctcaattcctcgtctccaggaatgaggttttctaacggaggagatggaggtgtcagagaggctggagaggtgcaaaaggcgttggagaatgctgtggaggatatggacttgatggggaggcttttggataagcttgataagcttcagcatcgggcgcaggagtgtgacttgagtatggtggatgtgaagattagtaagttgatgtcagaacttgggtttgcgctggaggatggggacaggttggtggcttattttagtagtggttggcagatgaggatgtcacttggcaagattttgcttcagagggtgcaaaaggtgttggagagtgctgtggaggatatggacttgatggggaggctattggatgagcttggtaagcttcagaatcaggcgcaggagtgtgacttgagtatggtggatgcaaatattagtaagttgatgccggaacttgggtttgcgcccgagaatagggataggttggtggcttcatttagtagtggttggcagttgaggatgtcacatggcaagattttgcttcaggctgaggcactggatttaaataaaacagtgcctgagacagtagaagaagcagcaggggattggagacttgatgatgtaaagggcctccttggttgttgtaatttcaaagcagatatgcttgatagaaaggtttccctcttaagtggtggtgagaagtactatctagagaagaatctagatgctagggaaagagagctcgtgcgtgaggcagagattgaggagaaggctcctaaagtcaaagccaaatcaaagatgtctaaaggtaagaatgcttccatcgctgaaaaggaagctcggaagaagcaaaagatgcaggcattccagcaagcaaaggcaaaatcgaaaggaataaagaacgctaagagatggaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

325

Amino Acids

36.35

Weight (kDa)

6.8

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 34, 45
AciI CCGC 2 cut(s) 18, 43
AcuI CTGAAG 4 cut(s) 191, 347, 428, 584
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 37, 761
AfiI CCNNNNNNNGG 3 cut(s) 27, 512, 531
AflII CTTAAG 1 cut(s) 742
AgsI TTSAA 1 cut(s) 709
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 6 cut(s) 196, 205, 433, 442, 799, 896
AluI AGCT 6 cut(s) 196, 205, 433, 442, 799, 896
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 3 cut(s) 81, 632, 661
AlwNI CAGNNNCTG 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 1 cut(s) 685
ApeKI GCWGC 1 cut(s) 653
Asp700I GAANNNNTTC 1 cut(s) 733
AspLEI GCGC 4 cut(s) 220, 286, 457, 523
AspS9I GGNCC 1 cut(s) 685
AsuHPI GGTGA 1 cut(s) 764
AvaI CYCGRG 1 cut(s) 524
BanII GRGCYC 1 cut(s) 801
BarI GAAGNNNNNNTAC 2 cut(s) 859, 891
BauI CACGAG 1 cut(s) 800
Bbv12I GWGCWC 1 cut(s) 801
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 1 cut(s) 665
BccI CCATC 6 cut(s) 101, 169, 287, 406, 887, 963
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 3 cut(s) 81, 632, 661
BfaI CTAG 3 cut(s) 767, 779, 786
BfrI CTTAAG 1 cut(s) 742
BisI GCNGC 1 cut(s) 654
BlsI GCNGC 1 cut(s) 655
BmcAI AGTACT 1 cut(s) 761
Bme1390I CCNGG 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 685
BmiI GGNNCC 1 cut(s) 831
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 5 cut(s) 220, 472, 492, 772, 903
BplI GAGNNNNNCTC 1 cut(s) 37
BpmI CTGGAG 3 cut(s) 63, 147, 308
Bpu10I CCTNAGC 1 cut(s) 606
BpuEI CTTGAG 2 cut(s) 253, 490
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 691
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 512, 531
Bse1I ACTGG 1 cut(s) 618
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 691
BseGI GGATG 6 cut(s) 250, 298, 345, 433, 487, 582
BseLI CCNNNNNNNGG 3 cut(s) 27, 512, 531
BseMII CTCAG 2 cut(s) 597, 627
BseNI ACTGG 1 cut(s) 618
BseRI GAGGAG 3 cut(s) 26, 117, 836
BseXI GCAGC 1 cut(s) 665
Bsh1236I CGCG 2 cut(s) 34, 45
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 687
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 801
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 3 cut(s) 27, 512, 531
BsmAI GTCTC 3 cut(s) 81, 632, 661
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 3 cut(s) 157, 877, 920
BsnI GGCC 1 cut(s) 687
BsoBI CYCGRG 1 cut(s) 524
Bsp1286I GDGCHC 1 cut(s) 801
BspACI CCGC 2 cut(s) 18, 43
BspANI GGCC 1 cut(s) 687
BspCNI CTCAG 2 cut(s) 598, 628
BspFNI CGCG 2 cut(s) 34, 45
BspLI GGNNCC 1 cut(s) 831
BspTI CTTAAG 1 cut(s) 742
BsrI ACTGG 1 cut(s) 618
BssECI CCNNGG 1 cut(s) 691
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 800
BssT1I CCWWGG 1 cut(s) 691
Bst2BI CACGAG 1 cut(s) 800
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 631, 643
BstACI GRCGYC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 742
BstAPI GCANNNNNTGC 1 cut(s) 913
BstC8I GCNNGC 2 cut(s) 918, 930
BstDEI CTNAG 3 cut(s) 606, 636, 963
BstF5I GGATG 6 cut(s) 250, 298, 345, 433, 487, 582
BstFNI CGCG 2 cut(s) 34, 45
BstHHI GCGC 4 cut(s) 220, 286, 457, 523
BstMAI GTCTC 3 cut(s) 81, 632, 661
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 5 cut(s) 202, 217, 439, 881, 913
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstUI CGCG 2 cut(s) 34, 45
BstV1I GCAGC 1 cut(s) 665
BsuRI GGCC 1 cut(s) 687
BtgZI GCGATG 1 cut(s) 865
BtsCI GGATG 6 cut(s) 250, 298, 345, 433, 487, 582
BtsIMutI CAGTG 2 cut(s) 611, 636
Cac8I GCNNGC 2 cut(s) 918, 930
CaiI CAGNNNCTG 1 cut(s) 635
CfoI GCGC 4 cut(s) 220, 286, 457, 523
Cfr13I GGNCC 1 cut(s) 685
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 36, 760
CviAII CATG 1 cut(s) 584
CviQI GTAC 2 cut(s) 36, 760
DdeI CTNAG 3 cut(s) 606, 636, 963
DraI TTTAAA 1 cut(s) 621
EciI GGCGGA 1 cut(s) 7
Ecl136II GAGCTC 1 cut(s) 799
Eco130I CCWWGG 1 cut(s) 691
Eco24I GRGCYC 1 cut(s) 801
Eco53kI GAGCTC 1 cut(s) 799
Eco57I CTGAAG 4 cut(s) 191, 347, 428, 584
Eco88I CYCGRG 1 cut(s) 524
EcoICRI GAGCTC 1 cut(s) 799
EcoO109I RGGNCCY 1 cut(s) 685
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 691
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 691
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 1 cut(s) 587
FaiI YATR 6 cut(s) 167, 239, 404, 476, 585, 719
FaqI GGGAC 1 cut(s) 311
FatI CATG 1 cut(s) 583
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 654
FokI GGATG 6 cut(s) 257, 305, 352, 440, 494, 589
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 1 cut(s) 654
FspBI CTAG 3 cut(s) 767, 779, 786
GlaI GCGC 4 cut(s) 219, 285, 456, 522
GluI GCNGC 1 cut(s) 654
GsuI CTGGAG 3 cut(s) 63, 147, 308
HaeIII GGCC 1 cut(s) 687
HapII CCGG 1 cut(s) 506
HgaI GACGC 1 cut(s) 59
HhaI GCGC 4 cut(s) 220, 286, 457, 523
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 1 cut(s) 587
Hin6I GCGC 4 cut(s) 218, 284, 455, 521
HinP1I GCGC 4 cut(s) 218, 284, 455, 521
HindIII AAGCTT 3 cut(s) 194, 203, 440
HinfI GANTC 3 cut(s) 14, 448, 775
HpaII CCGG 1 cut(s) 506
HphI GGTGA 1 cut(s) 764
Hpy188I TCNGA 5 cut(s) 119, 271, 366, 447, 900
Hpy188III TCNNGA 2 cut(s) 767, 779
Hpy99I CGWCG 2 cut(s) 50, 53
HpyAV CCTTC 1 cut(s) 820
HpyCH4III ACNGT 2 cut(s) 631, 643
HpyCH4V TGCA 4 cut(s) 136, 373, 485, 916
HpyF10VI GCNNNNNNNGC 5 cut(s) 202, 217, 439, 881, 913
HpyF3I CTNAG 3 cut(s) 606, 636, 963
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 1 cut(s) 587
HspAI GCGC 4 cut(s) 218, 284, 455, 521
LmnI GCTCC 1 cut(s) 835
Lsp1109I GCAGC 1 cut(s) 665
LweI GCATC 5 cut(s) 220, 472, 492, 772, 903
MaeI CTAG 3 cut(s) 767, 779, 786
MaeIII GTNAC 5 cut(s) 59, 227, 342, 464, 579
MboII GAAGA 4 cut(s) 262, 659, 784, 913
MhlI GDGCHC 1 cut(s) 801
MluCI AATT 3 cut(s) 67, 703, 973
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 2 cut(s) 126, 363
MroXI GAANNNNTTC 1 cut(s) 733
MseI TTAA 3 cut(s) 620, 743, 976
MspCI CTTAAG 1 cut(s) 742
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 3 cut(s) 157, 877, 920
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 2 cut(s) 34, 45
MwoI GCNNNNNNNGC 5 cut(s) 202, 217, 439, 881, 913
NlaIII CATG 1 cut(s) 587
NlaIV GGNNCC 1 cut(s) 831
NmuCI GTSAC 5 cut(s) 59, 227, 342, 464, 579
PctI GAATGC 3 cut(s) 157, 877, 920
PdmI GAANNNNTTC 1 cut(s) 733
PfeI GAWTC 2 cut(s) 448, 775
PfoI TCCNGGA 1 cut(s) 79
PkrI GCNGC 1 cut(s) 655
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 831
PspPI GGNCC 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 635
RsaI GTAC 2 cut(s) 37, 761
RsaNI GTAC 2 cut(s) 36, 760
SacI GAGCTC 1 cut(s) 801
SaqAI TTAA 3 cut(s) 620, 743, 976
SatI GCNGC 1 cut(s) 654
Sau96I GGNCC 1 cut(s) 685
ScaI AGTACT 1 cut(s) 761
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 801
SfaNI GCATC 5 cut(s) 220, 472, 492, 772, 903
SmiI ATTTAAAT 1 cut(s) 621
SmlI CTYRAG 3 cut(s) 232, 469, 742
SmoI CTYRAG 3 cut(s) 232, 469, 742
Sse9I AATT 3 cut(s) 67, 703, 973
SsiI CCGC 2 cut(s) 18, 43
SspI AATATT 1 cut(s) 490
SspMI CTAG 3 cut(s) 767, 779, 786
SstI GAGCTC 1 cut(s) 801
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 691
SwaI ATTTAAAT 1 cut(s) 621
TaaI ACNGT 2 cut(s) 631, 643
TaqI TCGA 1 cut(s) 944
TaqII GACCGA 1 cut(s) 18
TasI AATT 3 cut(s) 67, 703, 973
TatI WGTACW 1 cut(s) 759
TfiI GAWTC 2 cut(s) 448, 775
Tru1I TTAA 3 cut(s) 620, 743, 976
Tru9I TTAA 3 cut(s) 620, 743, 976
TscAI CASTG 2 cut(s) 618, 636
TseFI GTSAC 5 cut(s) 59, 227, 342, 464, 579
TseI GCWGC 1 cut(s) 653
Tsp45I GTSAC 5 cut(s) 59, 227, 342, 464, 579
TspDTI ATGAA 2 cut(s) 20, 540
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 2 cut(s) 618, 636
Vha464I CTTAAG 1 cut(s) 742
XbaI TCTAGA 2 cut(s) 766, 778
XmnI GAANNNNTTC 1 cut(s) 733
XspI CTAG 3 cut(s) 767, 779, 786
ZrmI AGTACT 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.