RLG00000018297

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000380
Physical Location & Seq
Forward (+)
28066232 .. 28067974
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018297

Sequence Viewer

Length: 432 bp
ATGGATGTGGCAGGTGCAGTTCTGCTTGGGGAGCATAATGTCCTAACAAACTCTTTTGAGCAAAATCAGGCTGAGGCACTTGATTTAAATAAAACAGTGCCTGAGACAGTAGAAGAAGCAGCAAGGGATTGGAGACTTGATGATATAAGAGCCTCCTTGGTTGTTGTAATTTCAAAGCAGATATGCTTGATAGAAAGTTTGTCTCCCTTTTGTTGGGCACGCCTTGCCTTCTGCAAGTTTATAGTAAAGCCATCTACTCTTCTAGTTCTGGATGAACCGACAAATTACTTGGACATTCCTTCAAAAGAGATGCTTGAGGGAATAAATGAGTACAAAGGCACTAGTATCAATTACCTGCAATTACAATTACTATCTAGAGAAAATCTAGATGCTAGGGAAGGAGAGCTCGAGCGTGAGGCAGAGATTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

144

Amino Acids

16.17

Weight (kDa)

4.44

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2
Acc36I ACCTGC 2 cut(s) 2, 363
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 2 cut(s) 174, 303
AhlI ACTAGT 1 cut(s) 341
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 3 cut(s) 98, 127, 207
AlwNI CAGNNNCTG 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 407
ApeKI GCWGC 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 408
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 259
BcoDI GTCTC 3 cut(s) 98, 127, 207
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 5 cut(s) 263, 342, 375, 386, 393
BfuAI ACCTGC 2 cut(s) 2, 363
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 407
BmsI GCATC 2 cut(s) 300, 379
Bpu10I CCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 10, 277
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 63, 93
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 3 cut(s) 98, 127, 207
BsoBI CYCGRG 1 cut(s) 407
Bsp1286I GDGCHC 2 cut(s) 220, 408
BspCNI CTCAG 2 cut(s) 64, 94
BspMI ACCTGC 2 cut(s) 2, 363
BssECI CCNNGG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 97, 109
Bst6I CTCTTC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 72, 102
BstF5I GGATG 2 cut(s) 10, 277
BstMAI GTCTC 3 cut(s) 98, 127, 207
BstMWI GCNNNNNNNGC 2 cut(s) 31, 224
BstSLI GKGCMC 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 131
BtsCI GGATG 2 cut(s) 10, 277
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 2 cut(s) 2, 363
Cac8I GCNNGC 1 cut(s) 220
CaiI CAGNNNCTG 1 cut(s) 101
Csp6I GTAC 1 cut(s) 331
CviJI RGCY 4 cut(s) 71, 152, 250, 406
CviKI_1 RGCY 4 cut(s) 71, 152, 250, 406
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 2 cut(s) 72, 102
DraI TTTAAA 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 406
Eco88I CYCGRG 1 cut(s) 407
EcoICRI GAGCTC 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 156
FaiI YATR 4 cut(s) 36, 146, 184, 242
FalI AAGNNNNNCTT 2 cut(s) 297, 329
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 17, 284
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 5 cut(s) 263, 342, 375, 386, 393
GluI GCNGC 1 cut(s) 120
Hpy188III TCNNGA 3 cut(s) 269, 375, 386
HpyAV CCTTC 3 cut(s) 238, 309, 392
HpyCH4III ACNGT 2 cut(s) 97, 109
HpyCH4V TGCA 3 cut(s) 17, 234, 358
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 224
HpyF3I CTNAG 2 cut(s) 72, 102
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 4 cut(s) 53, 114, 254, 368
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 2 cut(s) 300, 379
MaeI CTAG 5 cut(s) 263, 342, 375, 386, 393
MboII GAAGA 2 cut(s) 125, 251
MhlI GDGCHC 2 cut(s) 220, 408
MluCI AATT 5 cut(s) 168, 283, 349, 359, 365
MnlI CCTC 4 cut(s) 67, 163, 310, 409
MseI TTAA 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 31, 224
PaeR7I CTCGAG 1 cut(s) 407
PaqCI CACCTGC 1 cut(s) 2
PkrI GCNGC 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 408
PspXI VCTCGAGB 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 120
SduI GDGCHC 2 cut(s) 220, 408
SetI ASST 3 cut(s) 16, 357, 408
SfaNI GCATC 2 cut(s) 300, 379
Sfr274I CTCGAG 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 407
SmiI ATTTAAAT 1 cut(s) 87
SmlI CTYRAG 2 cut(s) 314, 407
SmoI CTYRAG 2 cut(s) 314, 407
SpeI ACTAGT 1 cut(s) 341
Sse9I AATT 5 cut(s) 168, 283, 349, 359, 365
SspMI CTAG 5 cut(s) 263, 342, 375, 386, 393
SstI GAGCTC 1 cut(s) 408
StyI CCWWGG 1 cut(s) 156
SwaI ATTTAAAT 1 cut(s) 87
TaaI ACNGT 2 cut(s) 97, 109
TaqI TCGA 1 cut(s) 408
TasI AATT 5 cut(s) 168, 283, 349, 359, 365
TatI WGTACW 1 cut(s) 330
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 102
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 1 cut(s) 102
XbaI TCTAGA 2 cut(s) 374, 385
XhoI CTCGAG 1 cut(s) 407
XspI CTAG 5 cut(s) 263, 342, 375, 386, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.