RLG00000001144

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
10793785 .. 10794245
461 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001144

Sequence Viewer

Length: 345 bp
ATGAGAATGAAACTGGTCAGAGGAAGAAGAGGGTTGCTAGCTACAAGGTGTACACTTTGGAGGGAAGCTAAAAGGGACTCTCAGGAAGAGCTAATATGGACTGCTTTTAAGGAGGAGATGGAGGTGTCAAAGAGGCTGGAGAGGGTGCAAAAGGCATTGGAGAATGCTGTAGAGGATATGAACTTGATGGTGAGGCTTTTGGATGAGCTTGGTAAGCTTCAGAATCAGGCGCAGGAGTGTGACTTGAGTATGGTGGATGCCAACATTAGTAAGTTGATGCCGGAACTTGGGTTTGTGCCTGAGGATGAGGATAGGTGGGTGGCTTCATTTAGTAGTGGTTCGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.23

Weight (kDa)

5.12

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 287
AluBI AGCT 5 cut(s) 41, 68, 91, 208, 217
AluI AGCT 5 cut(s) 41, 68, 91, 208, 217
AspLEI GCGC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 37
AxyI CCTNAGG 1 cut(s) 300
BccI CCATC 2 cut(s) 112, 181
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 168
BmsI GCATC 2 cut(s) 247, 267
BmtI GCTAGC 1 cut(s) 41
BpmI CTGGAG 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 18
Bse21I CCTNAGG 1 cut(s) 300
BseGI GGATG 3 cut(s) 208, 262, 310
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 2 cut(s) 95, 291
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 169
Bsp1407I TGTACA 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 94, 292
BspOI GCTAGC 1 cut(s) 41
BspQI GCTCTTC 1 cut(s) 81
BsrGI TGTACA 1 cut(s) 50
BsrI ACTGG 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 22, 81
BstAUI TGTACA 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 81, 300
BstF5I GGATG 3 cut(s) 208, 262, 310
BstHHI GCGC 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 300
BtsCI GGATG 3 cut(s) 208, 262, 310
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 51
CviJI RGCY 8 cut(s) 41, 68, 91, 136, 196, 208, 217, 323
CviKI_1 RGCY 8 cut(s) 41, 68, 91, 136, 196, 208, 217, 323
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 2 cut(s) 81, 300
Eam1104I CTCTTC 2 cut(s) 22, 81
EarI CTCTTC 2 cut(s) 22, 81
Eco57I CTGAAG 1 cut(s) 203
Eco81I CCTNAGG 1 cut(s) 300
FaiI YATR 3 cut(s) 97, 179, 251
FaqI GGGAC 1 cut(s) 89
FokI GGATG 3 cut(s) 215, 269, 317
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 158
HapII CCGG 1 cut(s) 281
HhaI GCGC 1 cut(s) 232
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 2 cut(s) 77, 223
HpaII CCGG 1 cut(s) 281
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 51, 53
Hpy188I TCNGA 2 cut(s) 20, 222
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 2 cut(s) 51, 53
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 2 cut(s) 81, 300
HspAI GCGC 1 cut(s) 230
LguI GCTCTTC 1 cut(s) 81
LpnPI CCDG 6 cut(s) 68, 122, 212, 218, 294, 312
LweI GCATC 2 cut(s) 247, 267
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 239
MboII GAAGA 3 cut(s) 36, 39, 98
MlyI GAGTC 1 cut(s) 71
MseI TTAA 1 cut(s) 108
MspI CCGG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 214
NheI GCTAGC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 81
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 223
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 108
SchI GAGTC 1 cut(s) 71
SetI ASST 8 cut(s) 43, 50, 70, 93, 126, 210, 219, 317
SfaNI GCATC 2 cut(s) 247, 267
SfcI CTRYAG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SspMI CTAG 1 cut(s) 38
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 23, 194, 315
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.