RLG00000011571

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000380
Physical Location & Seq
Reverse (-)
10613716 .. 10618105
4390 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011571

Sequence Viewer

Length: 729 bp
ATGACTACTACATCTAATGTAGTGCATCACATCATGCAAAAGATAAAAGCACCAGCACAAGCATGCTATCTTATGTTACAAACTAAGGAATCTAAGCGAGTAACCTTCGCCGCCTTTCGCTCCCACAAAGACTGCGTGTTCTGCCTCAACCTCCGCCTCTTAGAAGACCGAATCGTCACCACCGTCGACGGTTATGATGGTATTTCTGCATGCTTCTCCGGAAAGAAGTACATCGCCCTATTCTATTTTCTGAGGGACAATCTGGAGATGAACATCACTGCTTTGGTCAGAGGAAGAAGAGGGTTGCTAGCTACAAGGTGTACATTGTGGAGGGAAGCTGAAAGGGACTCTCAGGAAGAGCTAATATGGACTGCTTTTAAGGAGGAGATGGAGGTGTCAGAGAGGCTGGAGAGGGTGCAAAAGGCGTTGGAGAATGCTGTGGAGGATATGAACTTGATGGTGAGGCTTTTGGATGAGCTTGGTAAGCTTCAGAATCAGGCGCAGGAGTGTGACTTGAGTATGGTGGATGCCAACATTAGTAAGTTAATGCTGGAACTTGGCTTTGTGCCTGAGGATGAGGATAGGTGGGTGGCTTCATTTAGTAGTGGTTGGCAGATGAGGATGTCACTTGGGAAGATTTTGCTTCAGATGAACAACTTTCGGCATGCTTTATGTGCTTGTTATTGTAGTTTTCTGTATCGTGTTATTGCGGAAAAGTTGTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

243

Amino Acids

28.06

Weight (kDa)

6.45

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 218
AciI CCGC 3 cut(s) 111, 154, 710
AcuI CTGAAG 2 cut(s) 473, 629
AfaI GTAC 2 cut(s) 230, 322
AluBI AGCT 5 cut(s) 311, 338, 361, 478, 487
AluI AGCT 5 cut(s) 311, 338, 361, 478, 487
Aor13HI TCCGGA 1 cut(s) 218
AspLEI GCGC 1 cut(s) 502
AsuHPI GGTGA 2 cut(s) 169, 472
AsuNHI GCTAGC 1 cut(s) 307
AxyI CCTNAGG 1 cut(s) 570
BbsI GAAGAC 1 cut(s) 171
BccI CCATC 3 cut(s) 191, 382, 451
BfaI CTAG 1 cut(s) 308
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmsI GCATC 2 cut(s) 34, 517
BmtI GCTAGC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 171
BpmI CTGGAG 2 cut(s) 284, 428
BpuEI CTTGAG 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 218
Bse21I CCTNAGG 1 cut(s) 570
Bse8I GATNNNNATC 1 cut(s) 272
BseAI TCCGGA 1 cut(s) 218
BseGI GGATG 4 cut(s) 478, 532, 580, 627
BseJI GATNNNNATC 1 cut(s) 272
BseMII CTCAG 3 cut(s) 242, 365, 561
BseRI GAGGAG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 2 cut(s) 269, 359
BsmFI GGGAC 2 cut(s) 269, 359
BsmI GAATGC 1 cut(s) 439
Bsp13I TCCGGA 1 cut(s) 218
Bsp1407I TGTACA 1 cut(s) 320
BspACI CCGC 3 cut(s) 111, 154, 710
BspCNI CTCAG 3 cut(s) 243, 364, 562
BspEI TCCGGA 1 cut(s) 218
BspOI GCTAGC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 351
BsrGI TGTACA 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 184, 191
Bst6I CTCTTC 2 cut(s) 292, 351
BstAUI TGTACA 1 cut(s) 320
BstC8I GCNNGC 4 cut(s) 64, 211, 309, 666
BstDEI CTNAG 6 cut(s) 84, 93, 160, 251, 351, 570
BstF5I GGATG 4 cut(s) 478, 532, 580, 627
BstHHI GCGC 1 cut(s) 502
BstMWI GCNNNNNNNGC 3 cut(s) 141, 484, 674
BstNSI RCATGY 3 cut(s) 66, 213, 668
BstV2I GAAGAC 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 570
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 4 cut(s) 478, 532, 580, 627
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 4 cut(s) 64, 211, 309, 666
CfoI GCGC 1 cut(s) 502
Csp6I GTAC 2 cut(s) 229, 321
CviAII CATG 5 cut(s) 34, 63, 210, 665, 723
CviJI RGCY 9 cut(s) 311, 338, 361, 406, 466, 478, 487, 561, 593
CviKI_1 RGCY 9 cut(s) 311, 338, 361, 406, 466, 478, 487, 561, 593
CviQI GTAC 2 cut(s) 229, 321
DdeI CTNAG 6 cut(s) 84, 93, 160, 251, 351, 570
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
Eam1104I CTCTTC 2 cut(s) 292, 351
EarI CTCTTC 2 cut(s) 292, 351
EciI GGCGGA 1 cut(s) 143
Eco57I CTGAAG 2 cut(s) 473, 629
Eco81I CCTNAGG 1 cut(s) 570
FaeI CATG 5 cut(s) 37, 66, 213, 668, 726
FaqI GGGAC 2 cut(s) 269, 359
FatI CATG 5 cut(s) 33, 62, 209, 664, 722
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 4 cut(s) 485, 539, 587, 634
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 501
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 2 cut(s) 284, 428
HapII CCGG 1 cut(s) 219
HhaI GCGC 1 cut(s) 502
Hin1II CATG 5 cut(s) 37, 66, 213, 668, 726
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 4 cut(s) 89, 171, 347, 493
HpaII CCGG 1 cut(s) 219
HphI GGTGA 2 cut(s) 169, 472
Hpy166II GTNNAC 2 cut(s) 187, 321
Hpy188I TCNGA 5 cut(s) 252, 290, 400, 492, 648
Hpy188III TCNNGA 3 cut(s) 219, 263, 353
Hpy8I GTNNAC 2 cut(s) 187, 321
Hpy99I CGWCG 2 cut(s) 188, 191
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 184, 191
HpyCH4V TGCA 4 cut(s) 25, 37, 209, 418
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 484, 674
HpyF3I CTNAG 6 cut(s) 84, 93, 160, 251, 351, 570
Hsp92II CATG 5 cut(s) 37, 66, 213, 668, 726
HspAI GCGC 1 cut(s) 500
Kpn2I TCCGGA 1 cut(s) 218
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 9 cut(s) 66, 232, 248, 338, 392, 482, 488, 536, 582
LweI GCATC 2 cut(s) 34, 517
MaeI CTAG 1 cut(s) 308
MaeIII GTNAC 5 cut(s) 75, 100, 175, 509, 624
MboII GAAGA 5 cut(s) 176, 306, 309, 368, 646
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 408
MroI TCCGGA 1 cut(s) 218
MseI TTAA 2 cut(s) 378, 545
MslI CAYNNNNRTG 1 cut(s) 61
MspI CCGG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 439
MwoI GCNNNNNNNGC 3 cut(s) 141, 484, 674
NheI GCTAGC 1 cut(s) 307
NlaIII CATG 5 cut(s) 37, 66, 213, 668, 726
NmuCI GTSAC 3 cut(s) 175, 509, 624
NspI RCATGY 3 cut(s) 66, 213, 668
PaeI GCATGC 3 cut(s) 66, 213, 668
PciSI GCTCTTC 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 3 cut(s) 89, 171, 493
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
RsaI GTAC 2 cut(s) 230, 322
RsaNI GTAC 2 cut(s) 229, 321
RseI CAYNNNNRTG 1 cut(s) 61
SalI GTCGAC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 2 cut(s) 378, 545
SatI GCNGC 1 cut(s) 111
SchI GAGTC 1 cut(s) 341
SfaNI GCATC 2 cut(s) 34, 517
SgrDI CGTCGACG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
SphI GCATGC 3 cut(s) 66, 213, 668
SsiI CCGC 3 cut(s) 111, 154, 710
SspMI CTAG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 184, 191
TaqI TCGA 1 cut(s) 186
TaqII GACCGA 1 cut(s) 183
TatI WGTACW 2 cut(s) 228, 320
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 3 cut(s) 89, 171, 493
Tru1I TTAA 2 cut(s) 378, 545
Tru9I TTAA 2 cut(s) 378, 545
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 3 cut(s) 175, 509, 624
Tsp45I GTSAC 3 cut(s) 175, 509, 624
TspDTI ATGAA 4 cut(s) 284, 464, 585, 665
TspRI CASTG 1 cut(s) 283
XceI RCATGY 3 cut(s) 66, 213, 668
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.