Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000380

Physical Location & Seq

Genomic Coordinates Forward (+)

20441945 .. 20446763

Gene Structure 4819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG131400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGAAATAATGCATCCAACATGAGTGGAAAGAAGCAGGCCACCGGATCAAAACCAAGGTGCAACAAGCTTTGTCCTCACTGTGTTTGCGTGAAGCAGCTCTTCGTTCAACAAGCATTATGCGTGGCCAAGCTGAAGGTGTTGTTCAACAACAACCACAAGGGTGCGGTGTCTCCGCCTCAGGTGTCATTTAAGTCTCAGTACCTCTCCATTCACTACAACTTTGAAGATCAGTCTACCCTCCCCAACAGCTCCGTCGATGTTGGTCCCATATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGGCAACTATGGTTGCGAAGCTTGCTGACCCTGGATATGCATTTCAACTCTCTTCTTCTTTCCATTCTGTTGGTTTGAGTCTATCATATGAAGTGTTTTCCTATTTCAAAACAACCATTACTTCTTCCTCACCAGCTCATCCAGAATTCATATTTCTGCAAGAACCAGAGGATGGTGGCAAACTCTCAATTGGTGAAAATATGATAGATGCTGCTGGGACTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGATCTACCTTCCAAATACATACGAGACAGTGCATTTGAACAGCAATGTTGGGTTGCTCCAGGGATACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.49

Weight (kDa)

8.55

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09930
fragaria_vesca	FvH4_1g22620
malus_domestica	MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica	Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis	pycom15g29330
rosa_chinensis	RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata	RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora	Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa	Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha	Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana	Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	236
AciI	CCGC	2 cut(s)	167, 176
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	488
AgsI	TTSAA	7 cut(s)	110, 148, 227, 362, 424, 552, 613
AjnI	CCWGG	2 cut(s)	346, 633
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	6 cut(s)	70, 100, 133, 252, 337, 452
AluI	AGCT	6 cut(s)	70, 100, 133, 252, 337, 452
Alw26I	GTCTC	3 cut(s)	177, 201, 593
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	2 cut(s)	39, 126
ApeKI	GCWGC	2 cut(s)	97, 527
ApoI	RAATTY	1 cut(s)	461
ArsI	GACNNNNNNTTYG	2 cut(s)	592, 624
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	438, 521
AvaII	GGWCC	1 cut(s)	266
AxyI	CCTNAGG	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	109, 514
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	2 cut(s)	348, 635
BciVI	GTATCC	1 cut(s)	632
BcoDI	GTCTC	3 cut(s)	177, 201, 593
BfuI	GTATCC	1 cut(s)	632
BglII	AGATCT	1 cut(s)	576
BisI	GCNGC	2 cut(s)	98, 528
BlsI	GCNGC	2 cut(s)	99, 529
Bme1390I	CCNGG	2 cut(s)	348, 635
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	348, 635
BmsI	GCATC	2 cut(s)	23, 514
BpmI	CTGGAG	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	56, 346, 634
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse21I	CCTNAGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	625
BseBI	CCWGG	2 cut(s)	348, 635
BseDI	CCNNGG	3 cut(s)	56, 346, 634
BseGI	GGATG	3 cut(s)	14, 454, 493
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	2 cut(s)	194, 212
BseXI	GCAGC	2 cut(s)	109, 514
BseYI	CCCAGC	1 cut(s)	530
BshFI	GGCC	2 cut(s)	41, 128
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	252, 547
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	3 cut(s)	177, 201, 593
BsmFI	GGGAC	2 cut(s)	252, 547
BsnI	GGCC	2 cut(s)	41, 128
Bsp143I	GATC	4 cut(s)	47, 229, 295, 576
BspACI	CCGC	2 cut(s)	167, 176
BspANI	GGCC	2 cut(s)	41, 128
BspCNI	CTCAG	2 cut(s)	193, 211
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	625
BssECI	CCNNGG	3 cut(s)	56, 346, 634
BssMI	GATC	4 cut(s)	47, 229, 295, 576
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	2 cut(s)	348, 635
Bst4CI	ACNGT	2 cut(s)	83, 604
Bst6I	CTCTTC	2 cut(s)	107, 373
BstC8I	GCNNGC	2 cut(s)	39, 339
BstDEI	CTNAG	2 cut(s)	180, 198
BstF5I	GGATG	3 cut(s)	14, 454, 493
BstKTI	GATC	4 cut(s)	50, 232, 298, 579
BstMAI	GTCTC	3 cut(s)	177, 201, 593
BstMBI	GATC	4 cut(s)	47, 229, 295, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 536
BstNI	CCWGG	2 cut(s)	348, 635
BstSCI	CCNGG	2 cut(s)	346, 633
BstV1I	GCAGC	2 cut(s)	109, 514
BstX2I	RGATCY	1 cut(s)	576
BstXI	CCANNNNNNTGG	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	576
Bsu36I	CCTNAGG	1 cut(s)	180
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	2 cut(s)	41, 128
BtsCI	GGATG	3 cut(s)	14, 454, 493
BtsIMutI	CAGTG	2 cut(s)	79, 609
Cac8I	GCNNGC	2 cut(s)	39, 339
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	202
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	2 cut(s)	22, 293
CviJI	RGCY	9 cut(s)	41, 70, 100, 128, 133, 252, 337, 452, 545
CviKI_1	RGCY	9 cut(s)	41, 70, 100, 128, 133, 252, 337, 452, 545
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	180, 198
DpnI	GATC	4 cut(s)	49, 231, 297, 578
DpnII	GATC	4 cut(s)	47, 229, 295, 576
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	2 cut(s)	107, 373
EarI	CTCTTC	2 cut(s)	107, 373
EciI	GGCGGA	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	346, 633
EcoT14I	CCWWGG	1 cut(s)	56
EcoT22I	ATGCAT	2 cut(s)	16, 358
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	2 cut(s)	25, 296
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	2 cut(s)	252, 547
FatI	CATG	2 cut(s)	21, 292
FauNDI	CATATG	2 cut(s)	403, 644
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	98, 528
FokI	GGATG	2 cut(s)	441, 500
Fsp4HI	GCNGC	2 cut(s)	98, 528
GluI	GCNGC	2 cut(s)	98, 528
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	617
HaeIII	GGCC	2 cut(s)	41, 128
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	2 cut(s)	25, 296
HindIII	AAGCTT	2 cut(s)	68, 335
HinfI	GANTC	1 cut(s)	394
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	2 cut(s)	438, 521
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	1 cut(s)	237
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	130, 593
HpyCH4III	ACNGT	2 cut(s)	83, 604
HpyCH4V	TGCA	6 cut(s)	14, 63, 277, 356, 475, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 536
HpyF3I	CTNAG	2 cut(s)	180, 198
Hsp92II	CATG	2 cut(s)	25, 296
Kzo9I	GATC	4 cut(s)	47, 229, 295, 576
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	257, 636
Lsp1109I	GCAGC	2 cut(s)	109, 514
LweI	GCATC	2 cut(s)	23, 514
MalI	GATC	4 cut(s)	49, 231, 297, 578
MboI	GATC	4 cut(s)	47, 229, 295, 576
MboII	GAAGA	5 cut(s)	94, 239, 360, 363, 432
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	3 cut(s)	278, 461, 504
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	7 cut(s)	87, 189, 215, 251, 310, 454, 478
Mox20I	TGGCCA	1 cut(s)	128
Mph1103I	ATGCAT	2 cut(s)	16, 358
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	2 cut(s)	192, 573
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	348, 635
MunI	CAATTG	1 cut(s)	504
MvaI	CCWGG	2 cut(s)	348, 635
MwoI	GCNNNNNNNGC	2 cut(s)	338, 536
NdeI	CATATG	2 cut(s)	403, 644
NdeII	GATC	4 cut(s)	47, 229, 295, 576
NlaIII	CATG	2 cut(s)	25, 296
NlaIV	GGNNCC	1 cut(s)	268
NsiI	ATGCAT	2 cut(s)	16, 358
OliI	CACNNNNGTG	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	2 cut(s)	99, 529
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
Psp6I	CCWGG	2 cut(s)	346, 633
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	2 cut(s)	346, 633
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	576
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	192, 573
SatI	GCNGC	2 cut(s)	98, 528
Sau3AI	GATC	4 cut(s)	47, 229, 295, 576
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	2 cut(s)	348, 635
SfaNI	GCATC	2 cut(s)	23, 514
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	278, 461, 504
SsiI	CCGC	2 cut(s)	167, 176
StyD4I	CCNGG	2 cut(s)	346, 633
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	83, 604
TaqI	TCGA	1 cut(s)	258
TasI	AATT	3 cut(s)	278, 461, 504
Tru1I	TTAA	2 cut(s)	192, 573
Tru9I	TTAA	2 cut(s)	192, 573
TscAI	CASTG	2 cut(s)	86, 609
TseI	GCWGC	2 cut(s)	97, 527
TspDTI	ATGAA	2 cut(s)	420, 454
TspGWI	ACGGA	2 cut(s)	244, 272
TspRI	CASTG	2 cut(s)	86, 609
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	236
Zsp2I	ATGCAT	2 cut(s)	16, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.