Rroxscaffold_1G00021420

Outer envelope pore protein 37

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
26308031 .. 26313665
5635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021420.1

Sequence Viewer

Length: 636 bp
ATGCCTAGAAGGGTCAAATTGCCGCAACTGGAGTTCTCTCAGAGCTTCAAATCGTCGCCGGCTGCTTCAACAGATTTAGGGCATCATCTTCTTCTTCTAACACCCGAGCTCCTGTTCAGCACTTCTGCTGTGACTTCGGAGTTTGACAACCTGGCCAAGCTGAAGGTGTCGTTCAACAACGACCACAAGGGCGAGGTGTCTCCGCCTCAGGTGTCATTTATCTCTCAGTACCTCTCCATTCACTACAACTTCGAAGATCAGTCTACCCTCCTCAACAGCTCCGTCGATGTCGGTCCCAGATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACGAGGAGAGGCGACTATGGTTGCCAAGCTTGCTGACCCTGGAAATGCATTTCAACTCTCTTCTTCTTTCCCTTCTGCTGGTTTGCAAGTAACTCGAACTAGATGCGGTAAAGACTCTGAGGCTAAGATTGGTTCTATGGTGGCTACGTTCATCTGCCCTTTGGATGTCATCAAGACCAGGGTTACGGTCTACGACATGCTTACCGGTCGAGAGGATGGTGGCAAACTCTCAATTGGTGAAAATATGATAGTTGCTTCTGGGGTGCCATGCCATTTCAACAAACCCATTGTGGGTTGTTAA

Protein Analysis

211

Amino Acids

22.93

Weight (kDa)

7.72

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 598
AccI GTMKAC 2 cut(s) 263, 525
AciI CCGC 3 cut(s) 23, 203, 441
AcoI YGGCCR 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 413, 626
AgeI ACCGGT 1 cut(s) 539
AgsI TTSAA 5 cut(s) 49, 69, 175, 389, 613
AjnI CCWGG 3 cut(s) 150, 373, 512
AluBI AGCT 5 cut(s) 45, 109, 160, 279, 364
AluI AGCT 5 cut(s) 45, 109, 160, 279, 364
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 62
AsiGI ACCGGT 1 cut(s) 539
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 584
AsuII TTCGAA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 293
AxyI CCTNAGG 1 cut(s) 207
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 598
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 545
BcgI CGANNNNNNTGC 4 cut(s) 410, 420, 444, 454
BciT130I CCWGG 3 cut(s) 152, 375, 514
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 2 cut(s) 6, 435
BisI GCNGC 2 cut(s) 23, 63
BlsI GCNGC 2 cut(s) 24, 64
Bme1390I CCNGG 3 cut(s) 152, 375, 514
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 295, 600
BmrFI CCNGG 3 cut(s) 152, 375, 514
BmsI GCATC 2 cut(s) 91, 428
BpmI CTGGAG 1 cut(s) 50
Bpu14I TTCGAA 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 373, 513
BsaWI WCCGGW 1 cut(s) 539
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 626
Bse118I RCCGGY 2 cut(s) 58, 539
Bse1I ACTGG 1 cut(s) 33
Bse21I CCTNAGG 1 cut(s) 207
BseBI CCWGG 3 cut(s) 152, 375, 514
BseDI CCNNGG 2 cut(s) 373, 513
BseGI GGATG 2 cut(s) 505, 556
BseLI CCNNNNNNNGG 2 cut(s) 413, 626
BseMII CTCAG 4 cut(s) 53, 221, 239, 444
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 2 cut(s) 260, 354
BseXI GCAGC 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 544
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 598
BshTI ACCGGT 1 cut(s) 539
BsiEI CGRYCG 1 cut(s) 544
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 2 cut(s) 59, 540
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 413, 626
BsmAI GTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 104
Bsp119I TTCGAA 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 256, 322
BspACI CCGC 3 cut(s) 23, 203, 441
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 4 cut(s) 52, 220, 238, 445
BspLI GGNNCC 2 cut(s) 295, 600
BspT104I TTCGAA 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 598
BsrFI RCCGGY 2 cut(s) 58, 539
BsrI ACTGG 1 cut(s) 33
BssAI RCCGGY 2 cut(s) 58, 539
BssECI CCNNGG 2 cut(s) 373, 513
BssMI GATC 2 cut(s) 256, 322
Bst2UI CCWGG 3 cut(s) 152, 375, 514
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 1 cut(s) 400
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 60, 366
BstDEI CTNAG 5 cut(s) 39, 207, 225, 453, 459
BstF5I GGATG 2 cut(s) 505, 556
BstKTI GATC 2 cut(s) 259, 325
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 2 cut(s) 256, 322
BstMCI CGRYCG 1 cut(s) 544
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 3 cut(s) 152, 375, 514
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 3 cut(s) 150, 373, 512
BstV1I GCAGC 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 207
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 2 cut(s) 505, 556
Cac8I GCNNGC 2 cut(s) 60, 366
Cfr10I RCCGGY 2 cut(s) 58, 539
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 229
CspAI ACCGGT 1 cut(s) 539
CviAII CATG 3 cut(s) 320, 532, 603
CviJI RGCY 9 cut(s) 45, 62, 109, 155, 160, 279, 364, 458, 479
CviKI_1 RGCY 9 cut(s) 45, 62, 109, 155, 160, 279, 364, 458, 479
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 5 cut(s) 39, 207, 225, 453, 459
DpnI GATC 2 cut(s) 258, 324
DpnII GATC 2 cut(s) 256, 322
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
EciI GGCGGA 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 182
Eco81I CCTNAGG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 109
EcoRII CCWGG 3 cut(s) 150, 373, 512
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 3 cut(s) 323, 535, 606
FaiI YATR 6 cut(s) 321, 353, 473, 533, 581, 604
FaqI GGGAC 1 cut(s) 279
FatI CATG 3 cut(s) 319, 531, 602
FblI GTMKAC 2 cut(s) 263, 525
Fnu4HI GCNGC 2 cut(s) 23, 63
FokI GGATG 2 cut(s) 512, 563
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 23, 63
FspBI CTAG 2 cut(s) 6, 435
GluI GCNGC 2 cut(s) 23, 63
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 155
HapII CCGG 2 cut(s) 59, 540
Hin1II CATG 3 cut(s) 323, 535, 606
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 1 cut(s) 449
HpaII CCGG 2 cut(s) 59, 540
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 2 cut(s) 264, 526
Hpy188I TCNGA 3 cut(s) 42, 139, 454
Hpy188III TCNNGA 2 cut(s) 508, 545
Hpy8I GTNNAC 2 cut(s) 264, 526
Hpy99I CGWCG 2 cut(s) 58, 287
HpyAV CCTTC 3 cut(s) 3, 157, 417
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 3 cut(s) 304, 383, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 5 cut(s) 39, 207, 225, 453, 459
HpySE526I ACGT 1 cut(s) 482
Hsp92II CATG 3 cut(s) 323, 535, 606
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
Kzo9I GATC 2 cut(s) 256, 322
LmnI GCTCC 2 cut(s) 114, 284
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 2 cut(s) 91, 428
MaeI CTAG 2 cut(s) 6, 435
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 3 cut(s) 130, 424, 517
MalI GATC 2 cut(s) 258, 324
MboI GATC 2 cut(s) 256, 322
MboII GAAGA 6 cut(s) 80, 83, 86, 266, 387, 390
MfeI CAATTG 1 cut(s) 567
MhlI GDGCHC 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 3 cut(s) 17, 305, 567
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 1 cut(s) 443
MnlI CCTC 9 cut(s) 187, 216, 242, 278, 281, 332, 337, 448, 541
Mox20I TGGCCA 1 cut(s) 155
Mph1103I ATGCAT 1 cut(s) 385
MroNI GCCGGC 1 cut(s) 58
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 634
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 2 cut(s) 59, 540
MspR9I CCNGG 3 cut(s) 152, 375, 514
MunI CAATTG 1 cut(s) 567
MvaI CCWGG 3 cut(s) 152, 375, 514
MwoI GCNNNNNNNGC 1 cut(s) 365
NaeI GCCGGC 1 cut(s) 60
NdeII GATC 2 cut(s) 256, 322
NgoMIV GCCGGC 1 cut(s) 58
NlaIII CATG 3 cut(s) 323, 535, 606
NlaIV GGNNCC 2 cut(s) 295, 600
NmuCI GTSAC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 385
NspI RCATGY 1 cut(s) 535
NspV TTCGAA 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 60
PinAI ACCGGT 1 cut(s) 539
PkrI GCNGC 2 cut(s) 24, 64
PleI GAGTC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 443
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 3 cut(s) 150, 373, 512
PspGI CCWGG 3 cut(s) 150, 373, 512
PspN4I GGNNCC 2 cut(s) 295, 600
PspPI GGNCC 1 cut(s) 293
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 634
SatI GCNGC 2 cut(s) 23, 63
Sau3AI GATC 2 cut(s) 256, 322
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 3 cut(s) 152, 375, 514
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 2 cut(s) 91, 428
SfuI TTCGAA 1 cut(s) 252
SinI GGWCC 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 3 cut(s) 17, 305, 567
SsiI CCGC 3 cut(s) 23, 203, 441
SspMI CTAG 2 cut(s) 6, 435
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 150, 373, 512
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 1 cut(s) 485
TaqI TCGA 4 cut(s) 252, 285, 430, 544
TaqII GACCGA 1 cut(s) 281
TasI AATT 3 cut(s) 17, 305, 567
TauI GCSGC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 634
Tru9I TTAA 1 cut(s) 634
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 475
TspGWI ACGGA 2 cut(s) 271, 299
VpaK11BI GGWCC 1 cut(s) 293
XceI RCATGY 1 cut(s) 535
XmiI GTMKAC 2 cut(s) 263, 525
XspI CTAG 2 cut(s) 6, 435
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.