Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000380

Physical Location & Seq

Genomic Coordinates Reverse (-)

15532233 .. 15535508

Gene Structure 3276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGACAAAAATCCCCAGCGGGGCGGAGCTCCATTGGATACCCACCCCTAATGGGGGGAGAATTCGGGGACAAATGGGGAATGGGGATGGGGATCCCCAATCCCCACTATCTAAGATTGGGGATGGAGCGGGGATGCTGTCGGAAGCTGCAGAATATGCAAGAAAGAAAGGAGTAGTATTGAAAGGAGACTTGCCTATTGGAGTCGGTAGAGACGGTGTAGATACATGGGTCTATCCGAATCTGTTTCGCATGAACACATCTACCGGAGCTCCTCCAGATTATTTTGATAAAAATGGGCAGAACTGGGGTTTCCCTACTTACAATGGGGACGAGATGGCCAAAGACAATTATGCTTGGTGGCGTGCTCGATTGACACAGATGGCAAAATACTTTACAGCTTACCGGGTTTGGTGTTGTTGCAATCCCGGTTATGCGTGGTTGAAAGATATGATATGGGTTGGAAAGCATTCAAATATTTGGTCTGCATTCTTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000025 GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0004133 GO:0004134 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0010297 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0030246 GO:0030247 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0055114 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

CBM_20 Glyco_hydro_77

Protein Analysis

165

Amino Acids

18.41

Weight (kDa)

8.74

Isoelectric Point (pI)

13.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_77	PF02446	46 - 136	2.2e-38	4-alpha-glucanotransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09930
fragaria_vesca	FvH4_1g22620
malus_domestica	MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica	Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis	pycom15g29330
rosa_chinensis	RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata	RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora	Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa	Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha	Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana	Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	128
AciI	CCGC	3 cut(s)	18, 23, 128
AclWI	GGATC	2 cut(s)	86, 99
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	60
AfiI	CCNNNNNNNGG	4 cut(s)	19, 51, 52, 53
AgsI	TTSAA	3 cut(s)	181, 442, 471
AluBI	AGCT	4 cut(s)	28, 146, 269, 398
AluI	AGCT	4 cut(s)	28, 146, 269, 398
Alw21I	GWGCWC	3 cut(s)	30, 271, 367
Alw26I	GTCTC	2 cut(s)	180, 204
AlwI	GGATC	2 cut(s)	86, 99
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	60
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
Asp700I	GAANNNNTTC	1 cut(s)	466
AsuC2I	CCSGG	2 cut(s)	404, 426
BaeI	ACNNNNGTAYC	2 cut(s)	213, 246
BalI	TGGCCA	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	91
BanII	GRGCYC	2 cut(s)	30, 271
Bbv12I	GWGCWC	3 cut(s)	30, 271, 367
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	4 cut(s)	80, 116, 328, 373
BciVI	GTATCC	1 cut(s)	30
BcnI	CCSGG	2 cut(s)	404, 426
BcoDI	GTCTC	2 cut(s)	180, 204
BfmI	CTRYAG	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	404, 426
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	404, 426
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	258
BpuMI	CCSGG	2 cut(s)	404, 426
BsaBI	GATNNNNATC	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 51, 52, 53
Bse1I	ACTGG	1 cut(s)	308
Bse8I	GATNNNNATC	1 cut(s)	90
BseGI	GGATG	3 cut(s)	91, 127, 138
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	4 cut(s)	19, 51, 52, 53
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	14
BshFI	GGCC	1 cut(s)	338
BsiHKAI	GWGCWC	3 cut(s)	30, 271, 367
BsiSI	CCGG	3 cut(s)	264, 403, 426
BslFI	GGGAC	2 cut(s)	81, 341
BslI	CCNNNNNNNGG	4 cut(s)	19, 51, 52, 53
BsmAI	GTCTC	2 cut(s)	180, 204
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	2 cut(s)	81, 341
BsmI	GAATGC	2 cut(s)	466, 485
BsnI	GGCC	1 cut(s)	338
Bsp1286I	GDGCHC	3 cut(s)	30, 271, 367
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	3 cut(s)	18, 23, 128
BspANI	GGCC	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	2 cut(s)	86, 99
BsrBI	CCGCTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	308
BssMI	GATC	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	3 cut(s)	91, 127, 138
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	2 cut(s)	180, 204
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	402, 424
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	3 cut(s)	91, 127, 138
Cac8I	GCNNGC	1 cut(s)	363
CviAII	CATG	2 cut(s)	225, 250
CviJI	RGCY	5 cut(s)	28, 146, 269, 338, 398
CviKI_1	RGCY	5 cut(s)	28, 146, 269, 338, 398
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	38
Ecl136II	GAGCTC	2 cut(s)	28, 269
Eco24I	GRGCYC	2 cut(s)	30, 271
Eco53kI	GAGCTC	2 cut(s)	28, 269
EcoICRI	GAGCTC	2 cut(s)	28, 269
EcoRI	GAATTC	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	30, 271
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	2 cut(s)	228, 253
FaiI	YATR	7 cut(s)	156, 226, 251, 351, 432, 449, 454
FaqI	GGGAC	2 cut(s)	81, 341
FatI	CATG	2 cut(s)	224, 249
FauI	CCCGC	2 cut(s)	11, 121
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	3 cut(s)	98, 134, 145
FriOI	GRGCYC	2 cut(s)	30, 271
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	3 cut(s)	264, 403, 426
Hin1II	CATG	2 cut(s)	228, 253
HinfI	GANTC	2 cut(s)	201, 238
HpaII	CCGG	3 cut(s)	264, 403, 426
Hpy188I	TCNGA	2 cut(s)	142, 237
Hpy188III	TCNNGA	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	4 cut(s)	149, 158, 420, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	228, 253
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	5 cut(s)	25, 33, 125, 266, 274
LpnPI	CCDG	6 cut(s)	28, 277, 288, 289, 416, 439
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	123
MalI	GATC	1 cut(s)	93
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	1 cut(s)	91
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	3 cut(s)	30, 271, 367
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	2 cut(s)	60, 346
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	120, 439
MnlI	CCTC	1 cut(s)	282
Mox20I	TGGCCA	1 cut(s)	338
MroXI	GAANNNNTTC	1 cut(s)	466
MscI	TGGCCA	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	3 cut(s)	264, 403, 426
MspR9I	CCNGG	2 cut(s)	404, 426
Mva1269I	GAATGC	2 cut(s)	466, 485
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	2 cut(s)	404, 426
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	228, 253
NlaIV	GGNNCC	1 cut(s)	93
PctI	GAATGC	2 cut(s)	466, 485
PdmI	GAANNNNTTC	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp124BI	GAGCTC	2 cut(s)	30, 271
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	91
SacI	GAGCTC	2 cut(s)	30, 271
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	2 cut(s)	404, 426
SduI	GDGCHC	3 cut(s)	30, 271, 367
SetI	ASST	4 cut(s)	30, 148, 271, 400
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	60, 346
SsiI	CCGC	3 cut(s)	18, 23, 128
SspI	AATATT	1 cut(s)	475
SstI	GAGCTC	2 cut(s)	30, 271
StyD4I	CCNGG	2 cut(s)	402, 424
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	367
TasI	AATT	2 cut(s)	60, 346
TfiI	GAWTC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	266
XapI	RAATTY	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.