Rroxscaffold_6G00423750

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000380
Physical Location & Seq
Reverse (-)
44785854 .. 44794418
8565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423750.1

Sequence Viewer

Length: 315 bp
ATGCATTCGTATATGCCAACGCATATCGAACGAGCGGAGAAACTTCGGGAAGAGGATCTTGTTGAAAGGCCGTTCAAGAGGAAACGGATCGGGATCAGGTTTCTCGAATGGGGAAGAAGTGGGAGATTTGCTCCATTTGGAGATAAGGTGTTGTTTAGCAGAGCAAATCTCACAATTGAAAGAGGAGAGAAACTGGCCATTATTGGCCCAAATGGATGTGGCAAGAGTACTTTGCTGAAAGTAATAATGGGTTTACAAAAGCCAATAGCAGGAAACTATAAATCAAACCCGCTGAGCATCGTATCATCGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

104

Amino Acids

11.77

Weight (kDa)

10.07

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 54 - 94 2.2e-13 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 35
AciI CCGC 2 cut(s) 35, 290
AclWI GGATC 3 cut(s) 63, 95, 101
AcoI YGGCCR 1 cut(s) 195
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 3 cut(s) 65, 76, 179
AlwI GGATC 3 cut(s) 63, 95, 101
AoxI GGCC 3 cut(s) 68, 195, 205
AspS9I GGNCC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 197
BceAI ACGGC 1 cut(s) 55
BfaI CTAG 1 cut(s) 313
BlpI GCTNAGC 1 cut(s) 293
BmcAI AGTACT 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 206
BmsI GCATC 1 cut(s) 306
BplI GAGNNNNNCTC 4 cut(s) 115, 147, 153, 185
Bpu1102I GCTNAGC 1 cut(s) 293
BsaBI GATNNNNATC 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 92
BseGI GGATG 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 198
BshFI GGCC 3 cut(s) 70, 197, 207
BslI CCNNNNNNNGG 1 cut(s) 269
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 3 cut(s) 70, 197, 207
Bsp143I GATC 3 cut(s) 55, 87, 93
Bsp1720I GCTNAGC 1 cut(s) 293
BspACI CCGC 2 cut(s) 35, 290
BspANI GGCC 3 cut(s) 70, 197, 207
BspCNI CTCAG 1 cut(s) 285
BspPI GGATC 3 cut(s) 63, 95, 101
BsrBI CCGCTC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 198
BssMI GATC 3 cut(s) 55, 87, 93
Bst6I CTCTTC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 3 cut(s) 58, 90, 96
BstMBI GATC 3 cut(s) 55, 87, 93
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 3 cut(s) 70, 197, 207
BtsCI GGATG 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 228
CviJI RGCY 4 cut(s) 70, 197, 207, 262
CviKI_1 RGCY 4 cut(s) 70, 197, 207, 262
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 293
DpnI GATC 3 cut(s) 57, 89, 95
DpnII GATC 3 cut(s) 55, 87, 93
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 4 cut(s) 12, 14, 24, 279
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FauI CCCGC 1 cut(s) 297
FokI GGATG 1 cut(s) 228
FspBI CTAG 1 cut(s) 313
HaeIII GGCC 3 cut(s) 70, 197, 207
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 4 cut(s) 47, 76, 91, 104
Hpy8I GTNNAC 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 293
Kzo9I GATC 3 cut(s) 55, 87, 93
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 3 cut(s) 82, 179, 255
LweI GCATC 1 cut(s) 306
MaeI CTAG 1 cut(s) 313
MalI GATC 3 cut(s) 57, 89, 95
MbiI CCGCTC 1 cut(s) 35
MboI GATC 3 cut(s) 55, 87, 93
MboII GAAGA 2 cut(s) 62, 126
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 1 cut(s) 174
MluNI TGGCCA 1 cut(s) 197
MnlI CCTC 3 cut(s) 46, 72, 176
Mox20I TGGCCA 1 cut(s) 197
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 292
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 4
NdeII GATC 3 cut(s) 55, 87, 93
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 4
PspPI GGNCC 1 cut(s) 206
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
Sau3AI GATC 3 cut(s) 55, 87, 93
Sau96I GGNCC 1 cut(s) 206
ScaI AGTACT 1 cut(s) 229
SetI ASST 2 cut(s) 101, 150
SfaNI GCATC 1 cut(s) 306
Sse9I AATT 1 cut(s) 174
SsiI CCGC 2 cut(s) 35, 290
SspMI CTAG 1 cut(s) 313
TaqI TCGA 2 cut(s) 27, 105
TasI AATT 1 cut(s) 174
TatI WGTACW 1 cut(s) 227
TspGWI ACGGA 1 cut(s) 100
XspI CTAG 1 cut(s) 313
ZrmI AGTACT 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.