Rroxscaffold_1G00010030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000380
Physical Location & Seq
Reverse (-)
12535147 .. 12540779
5633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00010030.1

Sequence Viewer

Length: 342 bp
ATGGTGAGTCAATCACATGGTGACCGTCCAAGACTTAAGAGGTGGAGATCCAAGGTTGAAGACTTGGAGAGAGGTGGAGACATAGAGAAACATGACTTAGAGGAGAGAGACGGCAAGCGCCTAGCCCTGCCCAGGCTAGGGATGGCAAAAACTCCTAACAGGGTGGAGCTTCATTGGATACCCGTCCCTAAGGGAGGGAGAATTCAGGGACAAATAGGGAATAGGGATGGGGATCCTCAATCCCCTCTATCTAAGATTAGGGATGAGGCGGGGATGACATATCACACCGTCTCCATCGTCGTTCTCGAGAAGGGACAAGATTGCAGAAAGAATACCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.89

Weight (kDa)

9.83

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 269
AclWI GGATC 3 cut(s) 42, 227, 240
AcsI RAATTY 1 cut(s) 201
AdeI CACNNNGTG 1 cut(s) 20
AfiI CCNNNNNNNGG 4 cut(s) 132, 137, 138, 194
AflII CTTAAG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 2 cut(s) 131, 335
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 3 cut(s) 72, 102, 295
AlwI GGATC 3 cut(s) 42, 227, 240
Ama87I CYCGRG 1 cut(s) 305
ApoI RAATTY 1 cut(s) 201
AspLEI GCGC 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 16, 32
AvaI CYCGRG 1 cut(s) 305
AxyI CCTNAGG 1 cut(s) 189
BamHI GGATCC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 66
BccI CCATC 3 cut(s) 136, 221, 302
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 2 cut(s) 133, 337
BciVI GTATCC 1 cut(s) 171
BcoDI GTCTC 3 cut(s) 72, 102, 295
BfaI CTAG 2 cut(s) 122, 137
BfoI RGCGCY 1 cut(s) 121
BfrI CTTAAG 1 cut(s) 35
BfuI GTATCC 1 cut(s) 171
Bme1390I CCNGG 2 cut(s) 133, 337
BmeT110I CYCGRG 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 133, 337
BpiI GAAGAC 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 51, 131
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 137, 138, 194
Bse21I CCTNAGG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 2 cut(s) 133, 337
BseDI CCNNGG 2 cut(s) 51, 131
BseGI GGATG 4 cut(s) 147, 232, 268, 279
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 4 cut(s) 132, 137, 138, 194
BseRI GAGGAG 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 305
BslFI GGGAC 3 cut(s) 170, 222, 327
BslI CCNNNNNNNGG 4 cut(s) 132, 137, 138, 194
BsmAI GTCTC 3 cut(s) 72, 102, 295
BsmBI CGTCTC 2 cut(s) 102, 295
BsmFI GGGAC 3 cut(s) 170, 222, 327
BsoBI CYCGRG 1 cut(s) 305
Bsp143I GATC 2 cut(s) 47, 232
BspACI CCGC 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 3 cut(s) 42, 227, 240
BspTI CTTAAG 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 51, 131
BssMI GATC 2 cut(s) 47, 232
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 133, 337
Bst4CI ACNGT 2 cut(s) 26, 289
BstAFI CTTAAG 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 3 cut(s) 97, 189, 252
BstEII GGTNACC 1 cut(s) 20
BstENI CCTNNNNNAGG 1 cut(s) 192
BstF5I GGATG 4 cut(s) 147, 232, 268, 279
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 50, 235
BstMAI GTCTC 3 cut(s) 72, 102, 295
BstMBI GATC 2 cut(s) 47, 232
BstNI CCWGG 2 cut(s) 133, 337
BstPI GGTNACC 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 131, 335
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 2 cut(s) 47, 232
BstYI RGATCY 2 cut(s) 47, 232
Bsu36I CCTNAGG 1 cut(s) 189
BsuI GTATCC 1 cut(s) 171
BtsCI GGATG 4 cut(s) 147, 232, 268, 279
Cac8I GCNNGC 1 cut(s) 116
CfoI GCGC 1 cut(s) 120
CsiI ACCWGGT 1 cut(s) 335
CviAII CATG 2 cut(s) 17, 92
CviJI RGCY 3 cut(s) 125, 136, 169
CviKI_1 RGCY 3 cut(s) 125, 136, 169
DdeI CTNAG 3 cut(s) 97, 189, 252
DpnI GATC 2 cut(s) 49, 234
DpnII GATC 2 cut(s) 47, 232
DraIII CACNNNGTG 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 305
Eco91I GGTNACC 1 cut(s) 20
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoO65I GGTNACC 1 cut(s) 20
EcoRI GAATTC 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 131, 335
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
Esp3I CGTCTC 2 cut(s) 102, 295
FaeI CATG 2 cut(s) 20, 95
FaiI YATR 4 cut(s) 18, 83, 93, 280
FaqI GGGAC 3 cut(s) 170, 222, 327
FatI CATG 2 cut(s) 16, 91
FauI CCCGC 1 cut(s) 262
FokI GGATG 4 cut(s) 154, 239, 275, 286
FspBI CTAG 2 cut(s) 122, 137
GlaI GCGC 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 121
HhaI GCGC 1 cut(s) 120
Hin1II CATG 2 cut(s) 20, 95
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 1 cut(s) 7
HphI GGTGA 2 cut(s) 16, 32
Hpy188III TCNNGA 2 cut(s) 305, 307
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 2 cut(s) 26, 289
HpyCH4V TGCA 1 cut(s) 324
HpyF3I CTNAG 3 cut(s) 97, 189, 252
Hsp92II CATG 2 cut(s) 20, 95
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 47, 232
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 6 cut(s) 118, 140, 145, 145, 191, 322
MabI ACCWGGT 1 cut(s) 335
MaeI CTAG 2 cut(s) 122, 137
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 49, 234
MboI GATC 2 cut(s) 47, 232
MboII GAAGA 1 cut(s) 71
MflI RGATCY 2 cut(s) 47, 232
MluCI AATT 1 cut(s) 201
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 7 cut(s) 33, 65, 94, 188, 246, 255, 259
MseI TTAA 1 cut(s) 36
MspCI CTTAAG 1 cut(s) 35
MspR9I CCNGG 2 cut(s) 133, 337
MvaI CCWGG 2 cut(s) 133, 337
NdeII GATC 2 cut(s) 47, 232
NlaIII CATG 2 cut(s) 20, 95
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 131, 335
PspEI GGTNACC 1 cut(s) 20
PspGI CCWGG 2 cut(s) 131, 335
PspN4I GGNNCC 1 cut(s) 234
PsuI RGATCY 2 cut(s) 47, 232
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 2 cut(s) 47, 232
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 133, 337
SetI ASST 5 cut(s) 44, 57, 76, 171, 341
SexAI ACCWGGT 1 cut(s) 335
Sfr274I CTCGAG 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 35, 305
SmoI CTYRAG 2 cut(s) 35, 305
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 269
SspMI CTAG 2 cut(s) 122, 137
StyD4I CCNGG 2 cut(s) 131, 335
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 26, 289
TaqI TCGA 1 cut(s) 306
TasI AATT 1 cut(s) 201
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 161
Vha464I CTTAAG 1 cut(s) 35
XagI CCTNNNNNAGG 1 cut(s) 192
XapI RAATTY 1 cut(s) 201
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XhoI CTCGAG 1 cut(s) 305
XspI CTAG 2 cut(s) 122, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.