Rh2AG263500

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
30415319 .. 30420208
4890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG263500.1

Sequence Viewer

Length: 1116 bp
ATGTATCCCTGCTGGATTTGGAATCAGGCCAGAGGAAGAAGAGGGTTGCTAGCTACAAGGTGTACACTATGGAGGGAAGCTGAAAGGGACTCTCAGGAAGAGCTAATATGGACTGCTTTTAAGGAGGAGGTGGAGGTGTCAGAGAGGCTGGAGAGGGTGCAAAAGGCGTTGGAGAGTGCTGTGGAGGATATGGACTTGATGGGGAGGCTTTTGGATGAGCTTGGTAAGCTTCAGAATCAGGCGCAGGAGTGTGACTTGAGTATGGTGGATGCAAAGATTAGTAAGTTGATGCCGGAACTTGGGTTTGTGCCCGAGGATGGGGATAGGTTGGTGGCTTCATTTAGTAGTGGTTGGCAGATGAGGATGTCACTTGGGAAGATTTTGCTTCAGCACCCTGATTCACTACTGCTGGACGAGCGTACAAATCACCTTGACCTTGACACAATCAAGTGGCTCGAAGATTATCTCAATCAGCAGGATGTGCCAATGGCATGGATCGAAAGTCAAAATGCTGCTTGGGAGAAGCAGCAGAAGGAAATTGAGCACACAAAAGACTTGATACACAGGTTGGGCACTGGAGCCTTCTGCTGGAAAGAACAGAAGCTGGAGAAACTTCAGGAAGAGGATCTTGTTGAAAGGCTGTTCCAGAGGAAACAGATGAGGATCAGGTTTCCTGAATGGGGAAGAAGTGGAAGATTTGTTGCAACACTTAAGAATCTGGAAGCTGGCTTTGGAGATGAGGCTGAGGCACTTGATTTAAATAAAACAGTGCCTGAGACAGTAGAAGAAGCAGCAGGGGATTGGAGACTTGATGATATAAAGGGTCTCCTTGGTTGTTGTAATTTCAAAGCAGATATGGTTGATAGAAAGGTTTCCCTCTTAAGTGGTGGTGAGAAGGGAATAAATGAGTACAAAGGCACTGTTATCACAGTTTCTCATGACCGATACATTATAAAGCAAATAGTTAATAGAGTAGTGGAAGTTAAAGACAAAAGATTGCAAGATTATGAAGGCAATTACAATTACTATCTAGAGAAGAATCTAGATGCTAGGGAAAGAGAGCTCGAGCGTGAGGCAGAGATTGAGGAGAAGGCTCCTAAAGTCAAAGCCAAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

371

Amino Acids

43.21

Weight (kDa)

5.05

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 953
AclWI GGATC 3 cut(s) 503, 633, 671
AcuI CTGAAG 3 cut(s) 215, 371, 599
AfaI GTAC 3 cut(s) 64, 421, 911
AfiI CCNNNNNNNGG 5 cut(s) 299, 317, 318, 588, 680
AflII CTTAAG 2 cut(s) 710, 880
AgsI TTSAA 2 cut(s) 635, 847
AjuI GAANNNNNNNTTGG 2 cut(s) 714, 746
AluBI AGCT 8 cut(s) 53, 80, 103, 220, 229, 604, 725, 1063
AluI AGCT 8 cut(s) 53, 80, 103, 220, 229, 604, 725, 1063
Alw21I GWGCWC 2 cut(s) 546, 1065
Alw26I GTCTC 3 cut(s) 770, 799, 830
AlwI GGATC 3 cut(s) 503, 633, 671
AlwNI CAGNNNCTG 2 cut(s) 604, 773
Ama87I CYCGRG 2 cut(s) 311, 1064
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 3 cut(s) 512, 526, 791
Asp700I GAANNNNTTC 1 cut(s) 871
AspLEI GCGC 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 419, 902
AsuNHI GCTAGC 1 cut(s) 49
AvaI CYCGRG 2 cut(s) 311, 1064
BaeGI GKGCMC 2 cut(s) 312, 575
BaeI ACNNNNGTAYC 2 cut(s) 551, 584
BanII GRGCYC 1 cut(s) 1065
Bbv12I GWGCWC 2 cut(s) 546, 1065
BbvCI CCTCAGC 1 cut(s) 744
BbvI GCAGC 3 cut(s) 499, 538, 803
BccI CCATC 2 cut(s) 193, 311
BciVI GTATCC 1 cut(s) 15
BcoDI GTCTC 3 cut(s) 770, 799, 830
BfaI CTAG 4 cut(s) 50, 1031, 1043, 1050
BfrI CTTAAG 2 cut(s) 710, 880
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 3 cut(s) 513, 527, 792
BlsI GCNGC 3 cut(s) 514, 528, 793
BmeT110I CYCGRG 2 cut(s) 311, 1064
BmiI GGNNCC 2 cut(s) 580, 1095
BmsI GCATC 3 cut(s) 259, 279, 1036
BmtI GCTAGC 1 cut(s) 53
BpmI CTGGAG 3 cut(s) 170, 597, 626
Bpu10I CCTNAGC 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 662
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 2 cut(s) 312, 829
Bsc4I CCNNNNNNNGG 5 cut(s) 299, 317, 318, 588, 680
Bse1I ACTGG 1 cut(s) 580
Bse8I GATNNNNATC 1 cut(s) 662
BseDI CCNNGG 2 cut(s) 312, 829
BseGI GGATG 5 cut(s) 220, 274, 322, 369, 484
BseJI GATNNNNATC 1 cut(s) 662
BseLI CCNNNNNNNGG 5 cut(s) 299, 317, 318, 588, 680
BseMII CTCAG 3 cut(s) 107, 735, 765
BseNI ACTGG 1 cut(s) 580
BseRI GAGGAG 2 cut(s) 140, 1100
BseSI GKGCMC 2 cut(s) 312, 575
BseXI GCAGC 3 cut(s) 499, 538, 803
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 546, 1065
BsiHKCI CYCGRG 2 cut(s) 311, 1064
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 5 cut(s) 299, 317, 318, 588, 680
BsmAI GTCTC 3 cut(s) 770, 799, 830
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 830
BsoBI CYCGRG 2 cut(s) 311, 1064
Bsp1286I GDGCHC 4 cut(s) 312, 546, 575, 1065
Bsp1407I TGTACA 1 cut(s) 62
Bsp143I GATC 3 cut(s) 495, 625, 663
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 3 cut(s) 106, 736, 766
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 2 cut(s) 580, 1095
BspOI GCTAGC 1 cut(s) 53
BspPI GGATC 3 cut(s) 503, 633, 671
BspQI GCTCTTC 1 cut(s) 93
BspTI CTTAAG 2 cut(s) 710, 880
BspTNI GGTCTC 1 cut(s) 830
BsrGI TGTACA 1 cut(s) 62
BsrI ACTGG 1 cut(s) 580
BssECI CCNNGG 2 cut(s) 312, 829
BssMI GATC 3 cut(s) 495, 625, 663
BssT1I CCWWGG 1 cut(s) 829
Bst4CI ACNGT 4 cut(s) 769, 781, 922, 931
Bst6I CTCTTC 3 cut(s) 34, 93, 615
BstAFI CTTAAG 2 cut(s) 710, 880
BstAPI GCANNNNNTGC 1 cut(s) 481
BstAUI TGTACA 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 51, 727
BstDEI CTNAG 3 cut(s) 93, 744, 774
BstF5I GGATG 5 cut(s) 220, 274, 322, 369, 484
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 3 cut(s) 498, 628, 666
BstMAI GTCTC 3 cut(s) 770, 799, 830
BstMBI GATC 3 cut(s) 495, 625, 663
BstMWI GCNNNNNNNGC 3 cut(s) 226, 415, 481
BstSLI GKGCMC 2 cut(s) 312, 575
BstV1I GCAGC 3 cut(s) 499, 538, 803
BstX2I RGATCY 1 cut(s) 625
BstXI CCANNNNNNTGG 1 cut(s) 492
BstYI RGATCY 1 cut(s) 625
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 5 cut(s) 220, 274, 322, 369, 484
BtsIMutI CAGTG 3 cut(s) 573, 774, 918
Cac8I GCNNGC 2 cut(s) 51, 727
CaiI CAGNNNCTG 2 cut(s) 604, 773
CciI TCATGA 1 cut(s) 937
CfoI GCGC 1 cut(s) 244
Csp6I GTAC 3 cut(s) 63, 420, 910
CviAII CATG 2 cut(s) 492, 938
CviQI GTAC 3 cut(s) 63, 420, 910
DdeI CTNAG 3 cut(s) 93, 744, 774
DpnI GATC 3 cut(s) 497, 627, 665
DpnII GATC 3 cut(s) 495, 625, 663
DraI TTTAAA 1 cut(s) 759
Eam1104I CTCTTC 3 cut(s) 34, 93, 615
EarI CTCTTC 3 cut(s) 34, 93, 615
Ecl136II GAGCTC 1 cut(s) 1063
Eco130I CCWWGG 1 cut(s) 829
Eco24I GRGCYC 1 cut(s) 1065
Eco31I GGTCTC 1 cut(s) 830
Eco53kI GAGCTC 1 cut(s) 1063
Eco57I CTGAAG 3 cut(s) 215, 371, 599
Eco88I CYCGRG 2 cut(s) 311, 1064
EcoICRI GAGCTC 1 cut(s) 1063
EcoT14I CCWWGG 1 cut(s) 829
EcoT38I GRGCYC 1 cut(s) 1065
ErhI CCWWGG 1 cut(s) 829
FaeI CATG 2 cut(s) 495, 941
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 491, 937
Fnu4HI GCNGC 3 cut(s) 513, 527, 792
FokI GGATG 5 cut(s) 227, 281, 329, 376, 491
FriOI GRGCYC 1 cut(s) 1065
Fsp4HI GCNGC 3 cut(s) 513, 527, 792
FspBI CTAG 4 cut(s) 50, 1031, 1043, 1050
GlaI GCGC 1 cut(s) 243
GluI GCNGC 3 cut(s) 513, 527, 792
GsuI CTGGAG 3 cut(s) 170, 597, 626
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 293
HhaI GCGC 1 cut(s) 244
Hin1II CATG 2 cut(s) 495, 941
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 6 cut(s) 22, 89, 235, 398, 715, 1039
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 419, 902
Hpy166II GTNNAC 2 cut(s) 63, 65
Hpy188I TCNGA 2 cut(s) 142, 234
Hpy188III TCNNGA 8 cut(s) 95, 617, 646, 674, 719, 938, 1031, 1043
Hpy8I GTNNAC 2 cut(s) 63, 65
HpyAV CCTTC 5 cut(s) 526, 592, 889, 1004, 1084
HpyCH4III ACNGT 4 cut(s) 769, 781, 922, 931
HpyCH4V TGCA 4 cut(s) 160, 272, 704, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 415, 481
HpyF3I CTNAG 3 cut(s) 93, 744, 774
Hsp92II CATG 2 cut(s) 495, 941
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 3 cut(s) 495, 625, 663
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 578, 1099
Lsp1109I GCAGC 3 cut(s) 499, 538, 803
LweI GCATC 3 cut(s) 259, 279, 1036
MaeI CTAG 4 cut(s) 50, 1031, 1043, 1050
MaeIII GTNAC 2 cut(s) 251, 366
MalI GATC 3 cut(s) 497, 627, 665
MboI GATC 3 cut(s) 495, 625, 663
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 4 cut(s) 312, 546, 575, 1065
MluCI AATT 4 cut(s) 537, 841, 1015, 1021
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 871
MseI TTAA 6 cut(s) 120, 711, 758, 881, 966, 984
MspCI CTTAAG 2 cut(s) 710, 880
MspI CCGG 1 cut(s) 293
MwoI GCNNNNNNNGC 3 cut(s) 226, 415, 481
NdeII GATC 3 cut(s) 495, 625, 663
NheI GCTAGC 1 cut(s) 49
NlaIII CATG 2 cut(s) 495, 941
NlaIV GGNNCC 2 cut(s) 580, 1095
NmuCI GTSAC 2 cut(s) 251, 366
PaeR7I CTCGAG 1 cut(s) 1064
PagI TCATGA 1 cut(s) 937
PciSI GCTCTTC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 871
PfeI GAWTC 5 cut(s) 22, 235, 398, 715, 1039
PkrI GCNGC 3 cut(s) 514, 528, 793
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PsiI TTATAA 1 cut(s) 953
Psp124BI GAGCTC 1 cut(s) 1065
PspN4I GGNNCC 2 cut(s) 580, 1095
PspXI VCTCGAGB 1 cut(s) 1064
PstNI CAGNNNCTG 2 cut(s) 604, 773
PsuI RGATCY 1 cut(s) 625
RsaI GTAC 3 cut(s) 64, 421, 911
RsaNI GTAC 3 cut(s) 63, 420, 910
SacI GAGCTC 1 cut(s) 1065
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 6 cut(s) 120, 711, 758, 881, 966, 984
SatI GCNGC 3 cut(s) 513, 527, 792
Sau3AI GATC 3 cut(s) 495, 625, 663
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 4 cut(s) 312, 546, 575, 1065
SfaNI GCATC 3 cut(s) 259, 279, 1036
Sfr274I CTCGAG 1 cut(s) 1064
SlaI CTCGAG 1 cut(s) 1064
SmiI ATTTAAAT 1 cut(s) 759
SmlI CTYRAG 4 cut(s) 256, 710, 880, 1064
SmoI CTYRAG 4 cut(s) 256, 710, 880, 1064
Sse9I AATT 4 cut(s) 537, 841, 1015, 1021
SspMI CTAG 4 cut(s) 50, 1031, 1043, 1050
SstI GAGCTC 1 cut(s) 1065
StyI CCWWGG 1 cut(s) 829
SwaI ATTTAAAT 1 cut(s) 759
TaaI ACNGT 4 cut(s) 769, 781, 922, 931
TaqI TCGA 3 cut(s) 456, 498, 1065
TaqII GACCGA 1 cut(s) 957
TasI AATT 4 cut(s) 537, 841, 1015, 1021
TatI WGTACW 2 cut(s) 62, 909
TfiI GAWTC 5 cut(s) 22, 235, 398, 715, 1039
Tru1I TTAA 6 cut(s) 120, 711, 758, 881, 966, 984
Tru9I TTAA 6 cut(s) 120, 711, 758, 881, 966, 984
TscAI CASTG 3 cut(s) 580, 774, 925
TseFI GTSAC 2 cut(s) 251, 366
TseI GCWGC 3 cut(s) 512, 526, 791
Tsp45I GTSAC 2 cut(s) 251, 366
TspDTI ATGAA 2 cut(s) 327, 1023
TspRI CASTG 3 cut(s) 580, 774, 925
Vha464I CTTAAG 2 cut(s) 710, 880
XbaI TCTAGA 2 cut(s) 1030, 1042
XhoI CTCGAG 1 cut(s) 1064
XmnI GAANNNNTTC 1 cut(s) 871
XspI CTAG 4 cut(s) 50, 1031, 1043, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.