Rmu_co8391111.1_g000001

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8391111.1
OG0000380
Physical Location & Seq
Forward (+)
1 .. 974
974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8391111.1_g000001.1.cds

Sequence Viewer

Length: 395 bp
gcatttacatagatcattttactggccacctccaattcttttcttggcaagagcagaagctggagaaacttcaggaagaggatcttgttgaaaggctgttccagaggaaacagatgaggatcaggtttcctgaatgggggagaagtggaagatttgttgcaacacttaagaatctggaagctggctttggagataagatgctgtttagcagagcaaatctcacaattgaaagaggagagaaactggccattattcacccaaatggatgtggcaagagtactttgctgaaacatgtaatgggtttgcaaaagccaataataggtgagttctgcctggggagcataatgtcctaccaaactattttgagcaaaatcaggctgaggcacttgatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

130

Amino Acids

15.2

Weight (kDa)

9.74

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 89, 127
AcoI YGGCCR 2 cut(s) 24, 245
AcuI CTGAAG 1 cut(s) 55
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 2 cut(s) 136, 319
AflII CTTAAG 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 2 cut(s) 91, 229
AjnI CCWGG 1 cut(s) 332
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 2 cut(s) 60, 181
AluI AGCT 2 cut(s) 60, 181
AlwI GGATC 2 cut(s) 89, 127
AlwNI CAGNNNCTG 1 cut(s) 60
AoxI GGCC 2 cut(s) 24, 245
AsuHPI GGTGA 2 cut(s) 247, 334
BalI TGGCCA 2 cut(s) 26, 247
BbvCI CCTCAGC 1 cut(s) 379
BciT130I CCWGG 1 cut(s) 334
BfrI CTTAAG 1 cut(s) 166
BmcAI AGTACT 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 334
BmsI GCATC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 1 cut(s) 82
Bpu10I CCTNAGC 1 cut(s) 379
BsaBI GATNNNNATC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 333
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 319
Bse1I ACTGG 2 cut(s) 27, 248
Bse8I GATNNNNATC 1 cut(s) 118
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 1 cut(s) 271
BseJI GATNNNNATC 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 136, 319
BseMII CTCAG 1 cut(s) 370
BseNI ACTGG 2 cut(s) 27, 248
BseRI GAGGAG 1 cut(s) 248
BshFI GGCC 2 cut(s) 26, 247
BslI CCNNNNNNNGG 2 cut(s) 136, 319
BsnI GGCC 2 cut(s) 26, 247
Bsp143I GATC 3 cut(s) 12, 81, 119
BspANI GGCC 2 cut(s) 26, 247
BspCNI CTCAG 1 cut(s) 371
BspPI GGATC 2 cut(s) 89, 127
BspTI CTTAAG 1 cut(s) 166
BsrI ACTGG 2 cut(s) 27, 248
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 3 cut(s) 12, 81, 119
Bst2UI CCWGG 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 71
BstAFI CTTAAG 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 379
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 3 cut(s) 15, 84, 122
BstMBI GATC 3 cut(s) 12, 81, 119
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNI CCWGG 1 cut(s) 334
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 2 cut(s) 26, 247
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 60
Csp6I GTAC 1 cut(s) 278
CviAII CATG 1 cut(s) 292
CviJI RGCY 8 cut(s) 26, 60, 96, 181, 185, 247, 312, 378
CviKI_1 RGCY 8 cut(s) 26, 60, 96, 181, 185, 247, 312, 378
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 379
DpnI GATC 3 cut(s) 14, 83, 121
DpnII GATC 3 cut(s) 12, 81, 119
EaeI YGGCCR 2 cut(s) 24, 245
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 332
FaeI CATG 1 cut(s) 295
FaiI YATR 3 cut(s) 10, 293, 343
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 1 cut(s) 291
FokI GGATG 1 cut(s) 278
GsuI CTGGAG 1 cut(s) 82
HaeIII GGCC 2 cut(s) 26, 247
Hin1II CATG 1 cut(s) 295
HinfI GANTC 1 cut(s) 171
HphI GGTGA 2 cut(s) 247, 334
Hpy188III TCNNGA 4 cut(s) 73, 102, 130, 175
HpyCH4V TGCA 2 cut(s) 160, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 1 cut(s) 379
Hsp92II CATG 1 cut(s) 295
Kzo9I GATC 3 cut(s) 12, 81, 119
LmnI GCTCC 1 cut(s) 338
LweI GCATC 1 cut(s) 188
MalI GATC 3 cut(s) 14, 83, 121
MboI GATC 3 cut(s) 12, 81, 119
MboII GAAGA 2 cut(s) 88, 161
MfeI CAATTG 1 cut(s) 224
MflI RGATCY 1 cut(s) 81
MlsI TGGCCA 2 cut(s) 26, 247
MluCI AATT 2 cut(s) 34, 224
MluNI TGGCCA 2 cut(s) 26, 247
MnlI CCTC 6 cut(s) 40, 72, 98, 110, 226, 374
Mox20I TGGCCA 2 cut(s) 26, 247
MscI TGGCCA 2 cut(s) 26, 247
MseI TTAA 2 cut(s) 167, 393
MslI CAYNNNNRTG 1 cut(s) 260
Msp20I TGGCCA 2 cut(s) 26, 247
MspCI CTTAAG 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 334
MunI CAATTG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 338
NdeII GATC 3 cut(s) 12, 81, 119
NlaIII CATG 1 cut(s) 295
NspI RCATGY 1 cut(s) 295
PciI ACATGT 1 cut(s) 291
PfeI GAWTC 1 cut(s) 171
PscI ACATGT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PstNI CAGNNNCTG 1 cut(s) 60
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 2 cut(s) 167, 393
Sau3AI GATC 3 cut(s) 12, 81, 119
ScaI AGTACT 1 cut(s) 279
ScrFI CCNGG 1 cut(s) 334
SetI ASST 5 cut(s) 32, 62, 127, 183, 324
SfaNI GCATC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 2 cut(s) 34, 224
StyD4I CCNGG 1 cut(s) 332
TasI AATT 2 cut(s) 34, 224
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 2 cut(s) 167, 393
Tru9I TTAA 2 cut(s) 167, 393
Vha464I CTTAAG 1 cut(s) 166
XceI RCATGY 1 cut(s) 295
ZrmI AGTACT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.