Rroxscaffold_6G00390340

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000380
Physical Location & Seq
Forward (+)
5321966 .. 5330727
8762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390340.1

Sequence Viewer

Length: 603 bp
ATGGGTGTCTCCAGGACGTATGAGGGAGATTATTCTGAGTATTATATTGCAAAGGCAGCATGGATTGAAAGTCAAAATGCTGCTTGGGAGAAGTATCAGAAGGAAATTGAGCACACAAAAGACTTGATACACAAGTTGGGTGCTAGAGCAAATTATGGCCGTGCATCTTCTGCTGGAAAGAAGTGGGAGAAACCTCAGGAAGGGGATCTTGTTAAGAGGTTGTTCCAGAGGAAGCAGATGAGGATCAGGTGTCCTGAACGGGGAAGAAGTGGAAGATTTGTTGCAACACTTAAGAATCTGGAAGCTGGCTTTGGAGACAAGGTGCTGTTTAGCAGAGCAAATCTCACAATTGAAAGAGGAGAGAAACTGGCCATTATCGGCCCAAATGGATGTGGCAAGAGTACTCTGCTGAAACTAATATTGGGTTTACAAAAGCCAATAGCATGTGAAGTTCTGCTTGGGGAGCATAATGTCCTATCAAACTATTTTGAGCAAAATCAGGTGTTATGGAGCAAAGTAGAAGAAAAGAAGCCAAATCAGCAAATCTTCCTGTGCAGATCAGTCAAATTCAAAATGAAACTGAGAACAGCTCAGAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

200

Amino Acids

22.9

Weight (kDa)

9.69

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran_Xtn PF12848 2 - 68 6.6e-12 ABC transporter
ABC_tran PF00005 112 - 167 2.7e-13 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 213, 251
AcoI YGGCCR 2 cut(s) 157, 369
AcsI RAATTY 1 cut(s) 566
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 2 cut(s) 200, 260
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 3 cut(s) 68, 353, 571
AjnI CCWGG 1 cut(s) 11
AjuI GAANNNNNNNTTGG 6 cut(s) 294, 326, 404, 436, 441, 473
AluBI AGCT 2 cut(s) 305, 590
AluI AGCT 2 cut(s) 305, 590
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 13, 309
AlwI GGATC 2 cut(s) 213, 251
AoxI GGCC 3 cut(s) 157, 369, 379
ApeKI GCWGC 2 cut(s) 56, 80
ApoI RAATTY 1 cut(s) 566
AspS9I GGNCC 1 cut(s) 380
AxyI CCTNAGG 1 cut(s) 195
BaeI ACNNNNGTAYC 2 cut(s) 119, 152
BalI TGGCCA 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 67, 68
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 13, 309
BfaI CTAG 1 cut(s) 144
BfrI CTTAAG 1 cut(s) 290
BisI GCNGC 2 cut(s) 57, 81
BlsI GCNGC 2 cut(s) 58, 82
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 1 cut(s) 173
BplI GAGNNNNNCTC 3 cut(s) 327, 359, 574
BsaBI GATNNNNATC 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 260
Bse1I ACTGG 1 cut(s) 372
Bse21I CCTNAGG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 395
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 200, 260
BseMII CTCAG 3 cut(s) 27, 209, 572
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 372
BseXI GCAGC 2 cut(s) 67, 68
BsgI GTGCAG 1 cut(s) 574
BshFI GGCC 3 cut(s) 159, 371, 381
BsiHKAI GWGCWC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 200, 260
BsmAI GTCTC 2 cut(s) 13, 309
BsnI GGCC 3 cut(s) 159, 371, 381
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 205, 243, 557
BspANI GGCC 3 cut(s) 159, 371, 381
BspCNI CTCAG 3 cut(s) 28, 208, 573
BspPI GGATC 2 cut(s) 213, 251
BspTI CTTAAG 1 cut(s) 290
BsrI ACTGG 1 cut(s) 372
BssMI GATC 3 cut(s) 205, 243, 557
Bst2UI CCWGG 1 cut(s) 13
BstAFI CTTAAG 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 4 cut(s) 36, 195, 581, 591
BstENI CCTNNNNNAGG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 395
BstKTI GATC 3 cut(s) 208, 246, 560
BstMAI GTCTC 2 cut(s) 13, 309
BstMBI GATC 3 cut(s) 205, 243, 557
BstMWI GCNNNNNNNGC 4 cut(s) 56, 170, 463, 538
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 67, 68
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 195
BsuRI GGCC 3 cut(s) 159, 371, 381
BtsCI GGATG 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 402
CviAII CATG 2 cut(s) 60, 444
CviJI RGCY 8 cut(s) 159, 305, 309, 371, 381, 436, 532, 590
CviKI_1 RGCY 8 cut(s) 159, 305, 309, 371, 381, 436, 532, 590
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 4 cut(s) 36, 195, 581, 591
DpnI GATC 3 cut(s) 207, 245, 559
DpnII GATC 3 cut(s) 205, 243, 557
EaeI YGGCCR 2 cut(s) 157, 369
Eco81I CCTNAGG 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 11
FaeI CATG 2 cut(s) 63, 447
FaiI YATR 7 cut(s) 21, 45, 61, 156, 445, 468, 508
FalI AAGNNNNNCTT 4 cut(s) 192, 224, 441, 473
FatI CATG 2 cut(s) 59, 443
Fnu4HI GCNGC 2 cut(s) 57, 81
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 2 cut(s) 57, 81
FspBI CTAG 1 cut(s) 144
GluI GCNGC 2 cut(s) 57, 81
HaeIII GGCC 3 cut(s) 159, 371, 381
Hin1II CATG 2 cut(s) 63, 447
HinfI GANTC 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 3 cut(s) 37, 99, 594
Hpy188III TCNNGA 4 cut(s) 197, 226, 254, 299
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 94, 194
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 4 cut(s) 50, 164, 284, 555
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 170, 463, 538
HpyF3I CTNAG 4 cut(s) 36, 195, 581, 591
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 2 cut(s) 63, 447
Kzo9I GATC 3 cut(s) 205, 243, 557
LmnI GCTCC 2 cut(s) 463, 510
Lsp1109I GCAGC 2 cut(s) 67, 68
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 17
MalI GATC 3 cut(s) 207, 245, 559
MboI GATC 3 cut(s) 205, 243, 557
MboII GAAGA 5 cut(s) 159, 276, 285, 533, 538
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 4 cut(s) 105, 151, 348, 566
MluNI TGGCCA 1 cut(s) 371
MnlI CCTC 6 cut(s) 16, 204, 210, 222, 234, 350
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 2 cut(s) 213, 291
Msp20I TGGCCA 1 cut(s) 371
MspCI CTTAAG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 13
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 4 cut(s) 56, 170, 463, 538
NdeII GATC 3 cut(s) 205, 243, 557
NlaIII CATG 2 cut(s) 63, 447
NspI RCATGY 1 cut(s) 447
PfeI GAWTC 1 cut(s) 295
PfoI TCCNGGA 1 cut(s) 11
PkrI GCNGC 2 cut(s) 58, 82
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspPI GGNCC 1 cut(s) 380
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 213, 291
SatI GCNGC 2 cut(s) 57, 81
Sau3AI GATC 3 cut(s) 205, 243, 557
Sau96I GGNCC 1 cut(s) 380
ScaI AGTACT 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 114
SetI ASST 8 cut(s) 20, 196, 221, 251, 307, 324, 504, 592
SfaNI GCATC 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 4 cut(s) 105, 151, 348, 566
SspI AATATT 1 cut(s) 420
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 11
TaiI ACGT 1 cut(s) 20
TasI AATT 4 cut(s) 105, 151, 348, 566
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 2 cut(s) 213, 291
Tru9I TTAA 2 cut(s) 213, 291
TseI GCWGC 2 cut(s) 56, 80
TspDTI ATGAA 1 cut(s) 590
Vha464I CTTAAG 1 cut(s) 290
XagI CCTNNNNNAGG 1 cut(s) 198
XapI RAATTY 1 cut(s) 566
XceI RCATGY 1 cut(s) 447
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.