Rh1AG026000

Belongs to the glycosyltransferase 31 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
4748997 .. 4764350
15354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG026000.1

Sequence Viewer

Length: 666 bp
ATGGAGATAATTGAGAGCAATTTTATATGGCTGGTCTACTATCTCTATTACAGATATGACAAAGAACTTGTTCCATCCTCGTACAGCTTTAGCATCAGGGTTCACAACTCCGAGAACTATGGATACAGAAAAGAACAGGCACCTGAAGAGTTCTCAAAGAAGGCTACACTGTTCTTTGCTCATGTTGCTGATAAGTTTTATGCCAAAGTCAATGATGACGTTTATTTAAATATTGATGTTCTGGGAACTGCACTTGCAACTCTTTTAGACAAGCCTTGCGTTTATATTGGGTGCATGAAGTCGGGCGAAGTTTTCTCTGAGCTACTAAAGCTGACGGAGCACATGAAGTACTGTGTGGATCATCCTGAAGAGATCAACAAGCTTGCAAAAGTGAAGGCTCACGTTACTGAGGTCAAGGGTGTTATGATGGAAAATATTGAGAAGACTCGGGTGGATCAAATTACACAACAGCTGAAATTTGGAATATCAGAGTTTGAAAACAATGAGAACGTATCATCAGTACCTCAAGATCCAGACCACATATCCTCTACATATCAAGTTGACAAGGAGGGTGCAGAACAATTGGACCTGGAAAAGCAGGAAGCCATAGGTGTGCTTGATGGCTGTCACAGATTATACCGTCCTGGTTCTTATGTTATGCCTTGA

Protein Analysis

221

Amino Acids

25.5

Weight (kDa)

5.13

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 36
AclWI GGATC 3 cut(s) 366, 462, 524
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 2 cut(s) 165, 387
AfaI GTAC 3 cut(s) 83, 350, 522
AgsI TTSAA 1 cut(s) 497
AjnI CCWGG 2 cut(s) 588, 643
AluBI AGCT 5 cut(s) 87, 322, 331, 382, 472
AluI AGCT 5 cut(s) 87, 322, 331, 382, 472
Alw21I GWGCWC 1 cut(s) 342
AlwI GGATC 3 cut(s) 366, 462, 524
Ama87I CYCGRG 1 cut(s) 447
ApoI RAATTY 1 cut(s) 476
Asp700I GAANNNNTTC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 586
AvaI CYCGRG 1 cut(s) 447
AvaII GGWCC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 342
BccI CCATC 3 cut(s) 82, 421, 614
BciT130I CCWGG 2 cut(s) 590, 645
BciVI GTATCC 1 cut(s) 116
BfuI GTATCC 1 cut(s) 116
BmcAI AGTACT 1 cut(s) 350
Bme1390I CCNGG 2 cut(s) 590, 645
Bme18I GGWCC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 586
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 2 cut(s) 590, 645
BmsI GCATC 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 510
BseBI CCWGG 2 cut(s) 590, 645
BseGI GGATG 2 cut(s) 74, 361
BseMII CTCAG 2 cut(s) 309, 399
BsgI GTGCAG 2 cut(s) 234, 594
BshNI GGYRCC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 447
BsoBI CYCGRG 1 cut(s) 447
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 4 cut(s) 358, 372, 454, 529
BspCNI CTCAG 2 cut(s) 310, 400
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 3 cut(s) 366, 462, 524
BspT107I GGYRCC 1 cut(s) 139
BssMI GATC 4 cut(s) 358, 372, 454, 529
Bst2UI CCWGG 2 cut(s) 590, 645
Bst4CI ACNGT 3 cut(s) 171, 353, 641
Bst6I CTCTTC 2 cut(s) 141, 363
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 318, 408
BstF5I GGATG 2 cut(s) 74, 361
BstKTI GATC 4 cut(s) 361, 375, 457, 532
BstMBI GATC 4 cut(s) 358, 372, 454, 529
BstMWI GCNNNNNNNGC 3 cut(s) 185, 328, 337
BstNI CCWGG 2 cut(s) 590, 645
BstSCI CCNGG 2 cut(s) 588, 643
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuI GTATCC 1 cut(s) 116
BtsCI GGATG 2 cut(s) 74, 361
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 586
Csp6I GTAC 3 cut(s) 82, 349, 521
CviAII CATG 3 cut(s) 182, 295, 343
CviQI GTAC 3 cut(s) 82, 349, 521
DdeI CTNAG 2 cut(s) 318, 408
DpnI GATC 4 cut(s) 360, 374, 456, 531
DpnII GATC 4 cut(s) 358, 372, 454, 529
DraI TTTAAA 1 cut(s) 228
Eam1104I CTCTTC 2 cut(s) 141, 363
EarI CTCTTC 2 cut(s) 141, 363
Eco47I GGWCC 1 cut(s) 586
Eco57I CTGAAG 2 cut(s) 165, 387
Eco88I CYCGRG 1 cut(s) 447
EcoRII CCWGG 2 cut(s) 588, 643
FaeI CATG 3 cut(s) 185, 298, 346
FatI CATG 3 cut(s) 181, 294, 342
FblI GTMKAC 1 cut(s) 36
FokI GGATG 2 cut(s) 61, 348
Hin1II CATG 3 cut(s) 185, 298, 346
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 1 cut(s) 445
Hpy166II GTNNAC 3 cut(s) 37, 103, 562
Hpy188I TCNGA 3 cut(s) 112, 319, 490
Hpy188III TCNNGA 3 cut(s) 365, 527, 533
Hpy8I GTNNAC 3 cut(s) 37, 103, 562
HpyAV CCTTC 2 cut(s) 154, 388
HpyCH4III ACNGT 3 cut(s) 171, 353, 641
HpyCH4IV ACGT 3 cut(s) 219, 402, 510
HpyCH4V TGCA 5 cut(s) 251, 257, 294, 386, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 328, 337
HpyF3I CTNAG 2 cut(s) 318, 408
HpySE526I ACGT 3 cut(s) 219, 402, 510
Hsp92II CATG 3 cut(s) 185, 298, 346
Kzo9I GATC 4 cut(s) 358, 372, 454, 529
LmnI GCTCC 1 cut(s) 337
LweI GCATC 1 cut(s) 102
MaeII ACGT 3 cut(s) 219, 402, 510
MaeIII GTNAC 2 cut(s) 403, 626
MalI GATC 4 cut(s) 360, 374, 456, 531
MboI GATC 4 cut(s) 358, 372, 454, 529
MboII GAAGA 3 cut(s) 158, 380, 454
MfeI CAATTG 1 cut(s) 581
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 5 cut(s) 9, 19, 459, 476, 581
MlyI GAGTC 1 cut(s) 439
MnlI CCTC 5 cut(s) 88, 403, 534, 556, 562
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 611
MspA1I CMGCKG 1 cut(s) 472
MspR9I CCNGG 2 cut(s) 590, 645
MunI CAATTG 1 cut(s) 581
MvaI CCWGG 2 cut(s) 590, 645
MwoI GCNNNNNNNGC 3 cut(s) 185, 328, 337
NdeII GATC 4 cut(s) 358, 372, 454, 529
NlaIII CATG 3 cut(s) 185, 298, 346
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 69
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 588, 643
PspGI CCWGG 2 cut(s) 588, 643
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 586
PsrI GAACNNNNNNTAC 2 cut(s) 107, 139
PsuI RGATCY 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 3 cut(s) 83, 350, 522
RsaNI GTAC 3 cut(s) 82, 349, 521
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 1 cut(s) 227
Sau3AI GATC 4 cut(s) 358, 372, 454, 529
Sau96I GGNCC 1 cut(s) 586
ScaI AGTACT 1 cut(s) 350
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 2 cut(s) 590, 645
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 1 cut(s) 102
SinI GGWCC 1 cut(s) 586
SmiI ATTTAAAT 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 5 cut(s) 9, 19, 459, 476, 581
SspI AATATT 2 cut(s) 232, 436
StyD4I CCNGG 2 cut(s) 588, 643
SwaI ATTTAAAT 1 cut(s) 228
TaaI ACNGT 3 cut(s) 171, 353, 641
TaiI ACGT 3 cut(s) 222, 405, 513
TasI AATT 5 cut(s) 9, 19, 459, 476, 581
TatI WGTACW 1 cut(s) 348
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 626
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 2 cut(s) 311, 359
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 586
XapI RAATTY 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 69
ZrmI AGTACT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.