Rw2G020760

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000380
Physical Location & Seq
Forward (+)
28375511 .. 28377171
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020760.1

Sequence Viewer

Length: 660 bp
ATGGAGGTGTCAGAGAGACTGGAGAGGGTGCAAAAGGCGTTGGAGAGTGCTGTGGAGGATATGAACTTGATGGGGAGGCTTTTGGATGAGCTTGGTAAGCTTCAGAATCAGGCGCAGGAGTGTGACCTGAGTATGGTGGATGCAAAGATTTGTAAGTTGATGCCCGAATTTGGGTTTGCGCCCGACTATGGGGATTGGTTGGTGGCTTCATTTAGTAGTGGTTGGCAGATGAGGATGTCACTTTGGAAGATTTTGCTTCAGGACCCTGATTTACTACTGCTGGATGAGCCTACAAATCACCTTGACCTTGACACAATCGAGTGGCTCGAAGATTATCTCAATCAGCAGGATGTGCCCATGGTTATCATATCTCATGACCGAGCTTTTCAAGATCAATTGTGTACAAAAATAGTGGAAACTGATATGGGTGTCTCCAGGACGTATGAGGGAAATTATTTCGAGTATTATATTGCAAAGGCAGCATGGATTGAAAGTCAAAATGCAGCTTGGGAGAAGCAGCAGAAGGAAATTGAGCACACAAAAGACTTGATACACAGGTGGGCGCTGGAGCAAATTCTGGCCGTGCGTCTTCTGCTGGAAAGAAGCTGGAGAAACTTCAGGAAGAAGATCTTGTTGAAAGGCCATTCCAGAGGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

219

Amino Acids

25.72

Weight (kDa)

4.9

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 48 - 99 1.5e-06 ABC transporter
ABC_tran_Xtn PF12848 138 - 188 2.4e-11 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 2 cut(s) 167, 573
AcuI CTGAAG 3 cut(s) 86, 242, 601
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 5 cut(s) 133, 170, 171, 188, 189
AgsI TTSAA 3 cut(s) 389, 491, 637
AjnI CCWGG 1 cut(s) 434
AluBI AGCT 5 cut(s) 91, 100, 383, 506, 606
AluI AGCT 5 cut(s) 91, 100, 383, 506, 606
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 2 cut(s) 10, 436
AoxI GGCC 2 cut(s) 579, 640
ApeKI GCWGC 3 cut(s) 479, 503, 517
ApoI RAATTY 2 cut(s) 167, 573
AspLEI GCGC 3 cut(s) 115, 181, 565
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 357
BaeI ACNNNNGTAYC 2 cut(s) 542, 575
BbsI GAAGAC 1 cut(s) 581
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 3 cut(s) 491, 515, 529
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 566
BciT130I CCWGG 1 cut(s) 436
BcoDI GTCTC 2 cut(s) 10, 436
BfoI RGCGCY 1 cut(s) 566
BglII AGATCT 1 cut(s) 627
BisI GCNGC 3 cut(s) 480, 504, 518
BlsI GCNGC 3 cut(s) 481, 505, 519
Bme1390I CCNGG 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 2 cut(s) 130, 150
BpiI GAAGAC 1 cut(s) 581
BpmI CTGGAG 4 cut(s) 41, 418, 587, 628
BsaJI CCNNGG 1 cut(s) 357
Bsc4I CCNNNNNNNGG 5 cut(s) 133, 170, 171, 188, 189
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 436
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 5 cut(s) 91, 145, 240, 289, 355
BseLI CCNNNNNNNGG 5 cut(s) 133, 170, 171, 188, 189
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 3 cut(s) 491, 515, 529
BshFI GGCC 2 cut(s) 581, 642
BsiHKAI GWGCWC 1 cut(s) 537
BslI CCNNNNNNNGG 5 cut(s) 133, 170, 171, 188, 189
BsmAI GTCTC 2 cut(s) 10, 436
BsnI GGCC 2 cut(s) 581, 642
Bsp1286I GDGCHC 2 cut(s) 357, 537
Bsp1407I TGTACA 1 cut(s) 401
Bsp143I GATC 2 cut(s) 391, 627
Bsp19I CCATGG 1 cut(s) 357
BspANI GGCC 2 cut(s) 581, 642
BspCNI CTCAG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 264
BsrGI TGTACA 1 cut(s) 401
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 2 cut(s) 391, 627
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 436
BstAPI GCANNNNNTGC 1 cut(s) 352
BstAUI TGTACA 1 cut(s) 401
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 5 cut(s) 91, 145, 240, 289, 355
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 3 cut(s) 115, 181, 565
BstKTI GATC 2 cut(s) 394, 630
BstMAI GTCTC 2 cut(s) 10, 436
BstMBI GATC 2 cut(s) 391, 627
BstMWI GCNNNNNNNGC 5 cut(s) 97, 286, 352, 479, 592
BstNI CCWGG 1 cut(s) 436
BstSCI CCNGG 1 cut(s) 434
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 3 cut(s) 491, 515, 529
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 627
BstYI RGATCY 1 cut(s) 627
BsuRI GGCC 2 cut(s) 581, 642
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 5 cut(s) 91, 145, 240, 289, 355
CciI TCATGA 1 cut(s) 373
CfoI GCGC 3 cut(s) 115, 181, 565
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 402
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 3 cut(s) 358, 374, 483
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 393, 629
DpnII GATC 2 cut(s) 391, 627
EaeI YGGCCR 1 cut(s) 579
Eco130I CCWWGG 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 3 cut(s) 86, 242, 601
EcoO109I RGGNCCY 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 3 cut(s) 361, 377, 486
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FatI CATG 3 cut(s) 357, 373, 482
Fnu4HI GCNGC 3 cut(s) 480, 504, 518
FokI GGATG 5 cut(s) 98, 152, 247, 296, 362
Fsp4HI GCNGC 3 cut(s) 480, 504, 518
GlaI GCGC 3 cut(s) 114, 180, 564
GluI GCNGC 3 cut(s) 480, 504, 518
GsuI CTGGAG 4 cut(s) 41, 418, 587, 628
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 2 cut(s) 581, 642
HgaI GACGC 1 cut(s) 575
HhaI GCGC 3 cut(s) 115, 181, 565
Hin1II CATG 3 cut(s) 361, 377, 486
Hin6I GCGC 3 cut(s) 113, 179, 563
HinP1I GCGC 3 cut(s) 113, 179, 563
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 106
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 2 cut(s) 13, 105
Hpy188III TCNNGA 5 cut(s) 260, 374, 389, 619, 648
Hpy8I GTNNAC 1 cut(s) 402
HpyAV CCTTC 1 cut(s) 517
HpyCH4IV ACGT 1 cut(s) 440
HpyCH4V TGCA 4 cut(s) 31, 143, 473, 503
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 286, 352, 479, 592
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 440
Hsp92II CATG 3 cut(s) 361, 377, 486
HspAI GCGC 3 cut(s) 113, 179, 563
Kzo9I GATC 2 cut(s) 391, 627
LmnI GCTCC 1 cut(s) 568
Lsp1109I GCAGC 3 cut(s) 491, 515, 529
LweI GCATC 2 cut(s) 130, 150
MaeII ACGT 1 cut(s) 440
MaeIII GTNAC 2 cut(s) 122, 237
MalI GATC 2 cut(s) 393, 629
MboI GATC 2 cut(s) 391, 627
MboII GAAGA 5 cut(s) 259, 341, 581, 634, 637
MfeI CAATTG 1 cut(s) 395
MflI RGATCY 1 cut(s) 627
MhlI GDGCHC 2 cut(s) 357, 537
MluCI AATT 5 cut(s) 167, 395, 451, 528, 573
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 6 cut(s) 18, 49, 69, 225, 439, 644
MspR9I CCNGG 1 cut(s) 436
MunI CAATTG 1 cut(s) 395
MvaI CCWGG 1 cut(s) 436
MwoI GCNNNNNNNGC 5 cut(s) 97, 286, 352, 479, 592
NcoI CCATGG 1 cut(s) 357
NdeII GATC 2 cut(s) 391, 627
NlaIII CATG 3 cut(s) 361, 377, 486
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 2 cut(s) 122, 237
PagI TCATGA 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PfeI GAWTC 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 434
PkrI GCNGC 3 cut(s) 481, 505, 519
PpuMI RGGWCCY 1 cut(s) 262
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 434
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 262
PspPPI RGGWCCY 1 cut(s) 262
PsuI RGATCY 1 cut(s) 627
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SatI GCNGC 3 cut(s) 480, 504, 518
Sau3AI GATC 2 cut(s) 391, 627
Sau96I GGNCC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 2 cut(s) 357, 537
SfaNI GCATC 2 cut(s) 130, 150
SinI GGWCC 1 cut(s) 262
Sse9I AATT 5 cut(s) 167, 395, 451, 528, 573
StyD4I CCNGG 1 cut(s) 434
StyI CCWWGG 1 cut(s) 357
TaiI ACGT 1 cut(s) 443
TaqI TCGA 3 cut(s) 318, 327, 459
TaqII GACCGA 1 cut(s) 393
TasI AATT 5 cut(s) 167, 395, 451, 528, 573
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 1 cut(s) 106
TseFI GTSAC 2 cut(s) 122, 237
TseI GCWGC 3 cut(s) 479, 503, 517
Tsp45I GTSAC 2 cut(s) 122, 237
TspDTI ATGAA 2 cut(s) 77, 198
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 2 cut(s) 167, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.