Rh1DG206100

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000380
Physical Location & Seq
Reverse (-)
40282165 .. 40289621
7457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG206100.1

Sequence Viewer

Length: 642 bp
ATGCCTAGACTCAGGTCAAGATCGCCAATTTCAGAGTCGGCCGGATTTTGGTGCAGGCGAGTGACCTTCACCACCTTTAGCTCCCACAAAGACTGCGTGTTCCGCCTCAACTTCCGCCTCTTAGAGGACCGAATCGCCGCCACCGTCGACGGTTATGATGGTATTTCTACATGCTTCTCCGGAAAGAAGTACATCACCCTACTCTATTCTCTGAGGGACAAACAGAAGCTGGAGAAACTTCAGGAAGAGGATCTTGTTGAAAGGCCGTTCAAGAGGAAACAGATCAGGATCAGGTTTCCTGAATGGGGAAGAAGTGGGAGATTTGCTCCATTTGGAGATAAGGTGCTGTTTAGCAGAGCAAATCTCACAATTGAAAGAGGAGAGAAACTGGCCATTATTGGCCCAAATGGATGTGGCAAGAGTACTTTGTTGAAACTAGTAATGGGTTTACAAAAGCCAATAGCAGGTGAAGTTCTGCTTGGGGAGCATAATGTCCTAACAAACTTTTTTGAGCAAAATCAGGTGTGTACTGCCATTGCTATTTGCTACTTTGAAATAACTAATAGCATGGGGTTTCTTCTTAGTAAAAGAGGAACCGGATCTGTAAATTTCCTTGTTAGAATATATTGTTGGTTGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

213

Amino Acids

24.37

Weight (kDa)

9.68

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 119 - 167 4.7e-14 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 455
Acc36I ACCTGC 1 cut(s) 455
AccI GTMKAC 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 179
AciI CCGC 3 cut(s) 103, 115, 138
AclWI GGATC 3 cut(s) 258, 296, 607
AcoI YGGCCR 2 cut(s) 39, 390
AcsI RAATTY 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 3 cut(s) 191, 424, 529
AfiI CCNNNNNNNGG 4 cut(s) 48, 124, 305, 464
AgsI TTSAA 5 cut(s) 260, 271, 374, 433, 554
AhlI ACTAGT 1 cut(s) 436
AjuI GAANNNNNNNTTGG 3 cut(s) 462, 494, 613
AluBI AGCT 2 cut(s) 81, 229
AluI AGCT 2 cut(s) 81, 229
AlwI GGATC 3 cut(s) 258, 296, 607
AlwNI CAGNNNCTG 1 cut(s) 229
Aor13HI TCCGGA 1 cut(s) 179
AoxI GGCC 4 cut(s) 39, 263, 390, 400
ApoI RAATTY 1 cut(s) 607
AspS9I GGNCC 2 cut(s) 127, 401
AsuHPI GGTGA 3 cut(s) 61, 187, 479
AvaII GGWCC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 392
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 250
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 2 cut(s) 6, 437
BfuAI ACCTGC 1 cut(s) 455
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmcAI AGTACT 1 cut(s) 424
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 127, 401
BmiI GGNNCC 1 cut(s) 595
BoxI GACNNNNGTC 1 cut(s) 13
BplI GAGNNNNNCTC 4 cut(s) 310, 342, 348, 380
BpmI CTGGAG 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 287
BsaWI WCCGGW 2 cut(s) 179, 596
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 124, 305, 464
Bse1I ACTGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 287
BseAI TCCGGA 1 cut(s) 179
BseGI GGATG 1 cut(s) 416
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 4 cut(s) 48, 124, 305, 464
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 2 cut(s) 25, 203
BseNI ACTGG 1 cut(s) 393
BseRI GAGGAG 1 cut(s) 393
BseX3I CGGCCG 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 4 cut(s) 41, 265, 392, 402
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 3 cut(s) 42, 180, 597
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 4 cut(s) 48, 124, 305, 464
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 4 cut(s) 41, 265, 392, 402
Bsp13I TCCGGA 1 cut(s) 179
Bsp143I GATC 5 cut(s) 20, 250, 282, 288, 599
BspACI CCGC 3 cut(s) 103, 115, 138
BspANI GGCC 4 cut(s) 41, 265, 392, 402
BspCNI CTCAG 2 cut(s) 24, 204
BspEI TCCGGA 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 455
BspPI GGATC 3 cut(s) 258, 296, 607
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 1 cut(s) 393
BssMI GATC 5 cut(s) 20, 250, 282, 288, 599
Bst4CI ACNGT 2 cut(s) 145, 152
Bst6I CTCTTC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 5 cut(s) 11, 121, 212, 581, 639
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 416
BstKTI GATC 5 cut(s) 23, 253, 285, 291, 602
BstMBI GATC 5 cut(s) 20, 250, 282, 288, 599
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 102, 484
BstNSI RCATGY 1 cut(s) 174
BstPAI GACNNNNGTC 1 cut(s) 13
BstX2I RGATCY 2 cut(s) 250, 599
BstYI RGATCY 2 cut(s) 250, 599
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 4 cut(s) 41, 265, 392, 402
BtsCI GGATG 1 cut(s) 416
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 56
CaiI CAGNNNCTG 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 127, 401
Csp6I GTAC 3 cut(s) 190, 423, 528
CviAII CATG 2 cut(s) 171, 568
CviJI RGCY 7 cut(s) 41, 81, 229, 265, 392, 402, 457
CviKI_1 RGCY 7 cut(s) 41, 81, 229, 265, 392, 402, 457
CviQI GTAC 3 cut(s) 190, 423, 528
DdeI CTNAG 5 cut(s) 11, 121, 212, 581, 639
DpnI GATC 5 cut(s) 22, 252, 284, 290, 601
DpnII GATC 5 cut(s) 20, 250, 282, 288, 599
EaeI YGGCCR 2 cut(s) 39, 390
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
EciI GGCGGA 2 cut(s) 92, 104
EclXI CGGCCG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 127
Eco52I CGGCCG 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 224
EcoNI CCTNNNNNAGG 1 cut(s) 122
FaeI CATG 2 cut(s) 174, 571
FaiI YATR 5 cut(s) 156, 172, 489, 569, 625
FalI AAGNNNNNCTT 4 cut(s) 237, 269, 462, 494
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 170, 567
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 423
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 2 cut(s) 6, 437
GluI GCNGC 1 cut(s) 138
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 4 cut(s) 41, 265, 392, 402
HapII CCGG 3 cut(s) 42, 180, 597
Hin1II CATG 2 cut(s) 174, 571
HincII GTYRAC 2 cut(s) 148, 636
HindII GTYRAC 2 cut(s) 148, 636
HinfI GANTC 3 cut(s) 9, 35, 132
HpaII CCGG 3 cut(s) 42, 180, 597
HphI GGTGA 3 cut(s) 61, 187, 479
Hpy166II GTNNAC 4 cut(s) 148, 449, 528, 636
Hpy188I TCNGA 2 cut(s) 34, 213
Hpy188III TCNNGA 6 cut(s) 18, 180, 242, 271, 286, 299
Hpy8I GTNNAC 4 cut(s) 148, 449, 528, 636
Hpy99I CGWCG 2 cut(s) 149, 152
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 145, 152
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 484
HpyF3I CTNAG 5 cut(s) 11, 121, 212, 581, 639
Hsp92II CATG 2 cut(s) 174, 571
Kpn2I TCCGGA 1 cut(s) 179
Kzo9I GATC 5 cut(s) 20, 250, 282, 288, 599
LmnI GCTCC 3 cut(s) 86, 331, 484
MaeI CTAG 2 cut(s) 6, 437
MaeIII GTNAC 1 cut(s) 61
MalI GATC 5 cut(s) 22, 252, 284, 290, 601
MboI GATC 5 cut(s) 20, 250, 282, 288, 599
MboII GAAGA 3 cut(s) 257, 321, 569
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 2 cut(s) 250, 599
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 3 cut(s) 27, 369, 607
MluNI TGGCCA 1 cut(s) 392
MlyI GAGTC 2 cut(s) 3, 44
MnlI CCTC 8 cut(s) 116, 118, 128, 207, 241, 267, 371, 584
Mox20I TGGCCA 1 cut(s) 392
MroI TCCGGA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 392
MspI CCGG 3 cut(s) 42, 180, 597
MunI CAATTG 1 cut(s) 369
MwoI GCNNNNNNNGC 2 cut(s) 102, 484
NdeII GATC 5 cut(s) 20, 250, 282, 288, 599
NlaIII CATG 2 cut(s) 174, 571
NlaIV GGNNCC 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 61
NspI RCATGY 1 cut(s) 174
PaqCI CACCTGC 1 cut(s) 455
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 2 cut(s) 3, 43
PpsI GAGTC 2 cut(s) 3, 43
PshAI GACNNNNGTC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 595
PspPI GGNCC 2 cut(s) 127, 401
PstNI CAGNNNCTG 1 cut(s) 229
PsuI RGATCY 2 cut(s) 250, 599
RsaI GTAC 3 cut(s) 191, 424, 529
RsaNI GTAC 3 cut(s) 190, 423, 528
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 5 cut(s) 20, 250, 282, 288, 599
Sau96I GGNCC 2 cut(s) 127, 401
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 2 cut(s) 3, 44
SetI ASST 9 cut(s) 17, 68, 77, 83, 231, 296, 345, 469, 525
SgrDI CGTCGACG 1 cut(s) 146
SinI GGWCC 1 cut(s) 127
SpeI ACTAGT 1 cut(s) 436
Sse9I AATT 3 cut(s) 27, 369, 607
SsiI CCGC 3 cut(s) 103, 115, 138
SspMI CTAG 2 cut(s) 6, 437
TaaI ACNGT 2 cut(s) 145, 152
TaqI TCGA 1 cut(s) 147
TaqII GACCGA 1 cut(s) 144
TasI AATT 3 cut(s) 27, 369, 607
TatI WGTACW 3 cut(s) 189, 422, 527
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 1 cut(s) 132
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 122
XapI RAATTY 1 cut(s) 607
XceI RCATGY 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 2 cut(s) 6, 437
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.