Rmu_sc0005450.1_g000015

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005450.1
OG0000380
Physical Location & Seq
Reverse (-)
61890 .. 62893
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005450.1_g000015.1.cds

Sequence Viewer

Length: 666 bp
atggcgttgggcaaggtgaagaagctcgtctcgtccaatccagtagtcatcttcaggttctctctacctcttcatcttcttctgtgtgtctatatatatagaattgtcgatcgttttgaaccaatttggaaatttgacaataagattttgtttcgcagcaacaagctttgtcctcactgtgtttgcgtgaagcagctcttcgttcaacaagcattatgcgtggccaagctgaaggtgttgttcaacaacaaccacaagagtgcggtgtctccgcctcaggtgtcatttatctctcagtacctctccattcactacaactttgaagatcagtctaccctccccaacagctccgtcgatgttggtcccagattgcaattctgtgcttcccatgatctcaaggtgccttttttgcctctctctctaactctaactctaactctgcttccatttcactcttatgggaatgttgttcagtttgagagtgggtacttagttgagactgttgtggaaggaactgatattggagttgttcctttcaagatccgcatttcagaggatggcgaactctttgctgtggagtccattaatagcaacattgttcggattactcctccgttgtcccaatgtatgcaaaagtatttacttgtactgttttaccatatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NHL

Protein Analysis

221

Amino Acids

25.13

Weight (kDa)

8.81

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AccI GTMKAC 1 cut(s) 332
AciI CCGC 3 cut(s) 263, 272, 544
AclWI GGATC 1 cut(s) 535
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 2 cut(s) 37, 251
AfaI GTAC 3 cut(s) 299, 488, 648
AgsI TTSAA 5 cut(s) 119, 206, 244, 323, 538
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 5 cut(s) 25, 166, 196, 229, 348
AluI AGCT 5 cut(s) 25, 166, 196, 229, 348
Alw26I GTCTC 3 cut(s) 34, 273, 491
AlwI GGATC 1 cut(s) 535
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 156, 193
ApoI RAATTY 1 cut(s) 131
AseI ATTAAT 1 cut(s) 585
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 362
AxyI CCTNAGG 1 cut(s) 276
BalI TGGCCA 1 cut(s) 224
BanI GGYRCC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 168, 205
BccI CCATC 1 cut(s) 551
BcgI CGANNNNNNTGC 2 cut(s) 551, 585
BcoDI GTCTC 3 cut(s) 34, 273, 491
BisI GCNGC 2 cut(s) 157, 194
BlsI GCNGC 2 cut(s) 158, 195
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 364, 402
BpuEI CTTGAG 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 41
Bse21I CCTNAGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 562
BseMII CTCAG 2 cut(s) 290, 308
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 600
BseXI GCAGC 2 cut(s) 168, 205
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 400
BsiEI CGRYCG 1 cut(s) 112
BslFI GGGAC 2 cut(s) 348, 604
BsmAI GTCTC 3 cut(s) 34, 273, 491
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 348, 604
BsnI GGCC 1 cut(s) 224
Bsp143I GATC 4 cut(s) 109, 325, 391, 540
BspACI CCGC 3 cut(s) 263, 272, 544
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 2 cut(s) 289, 307
BspLI GGNNCC 2 cut(s) 364, 402
BspPI GGATC 1 cut(s) 535
BspQI GCTCTTC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 400
BsrI ACTGG 1 cut(s) 41
BssMI GATC 4 cut(s) 109, 325, 391, 540
Bst4CI ACNGT 3 cut(s) 179, 502, 651
Bst6I CTCTTC 2 cut(s) 75, 203
BstDEI CTNAG 3 cut(s) 276, 294, 490
BstF5I GGATG 1 cut(s) 562
BstKTI GATC 4 cut(s) 112, 328, 394, 543
BstMAI GTCTC 3 cut(s) 34, 273, 491
BstMBI GATC 4 cut(s) 109, 325, 391, 540
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 168, 205
BstX2I RGATCY 1 cut(s) 540
BstYI RGATCY 1 cut(s) 540
Bsu36I CCTNAGG 1 cut(s) 276
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 298, 487, 647
CviAII CATG 1 cut(s) 389
CviJI RGCY 6 cut(s) 25, 166, 196, 224, 229, 348
CviKI_1 RGCY 6 cut(s) 25, 166, 196, 224, 229, 348
CviQI GTAC 3 cut(s) 298, 487, 647
DdeI CTNAG 3 cut(s) 276, 294, 490
DpnI GATC 4 cut(s) 111, 327, 393, 542
DpnII GATC 4 cut(s) 109, 325, 391, 540
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 2 cut(s) 75, 203
EarI CTCTTC 2 cut(s) 75, 203
EciI GGCGGA 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 362
Eco57I CTGAAG 2 cut(s) 37, 251
Eco81I CCTNAGG 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 1 cut(s) 392
FaiI YATR 9 cut(s) 93, 95, 97, 99, 217, 390, 459, 629, 660
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 2 cut(s) 348, 604
FatI CATG 1 cut(s) 388
FblI GTMKAC 1 cut(s) 332
Fnu4HI GCNGC 2 cut(s) 157, 194
FokI GGATG 1 cut(s) 569
Fsp4HI GCNGC 2 cut(s) 157, 194
GluI GCNGC 2 cut(s) 157, 194
HaeIII GGCC 1 cut(s) 224
Hin1II CATG 1 cut(s) 392
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 1 cut(s) 578
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 2 cut(s) 553, 603
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 2 cut(s) 226, 503
HpyCH4III ACNGT 3 cut(s) 179, 502, 651
HpyCH4V TGCA 2 cut(s) 373, 631
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpyF3I CTNAG 3 cut(s) 276, 294, 490
Hsp92II CATG 1 cut(s) 392
Kzo9I GATC 4 cut(s) 109, 325, 391, 540
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 4 cut(s) 40, 54, 263, 379
Lsp1109I GCAGC 2 cut(s) 168, 205
MalI GATC 4 cut(s) 111, 327, 393, 542
MboI GATC 4 cut(s) 109, 325, 391, 540
MboII GAAGA 7 cut(s) 31, 43, 62, 68, 71, 190, 335
MflI RGATCY 1 cut(s) 540
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 4 cut(s) 102, 123, 131, 374
MluNI TGGCCA 1 cut(s) 224
MlyI GAGTC 1 cut(s) 587
MnlI CCTC 8 cut(s) 78, 183, 285, 311, 347, 423, 547, 621
Mox20I TGGCCA 1 cut(s) 224
MscI TGGCCA 1 cut(s) 224
MseI TTAA 1 cut(s) 585
MslI CAYNNNNRTG 2 cut(s) 258, 456
Msp20I TGGCCA 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 409
NdeII GATC 4 cut(s) 109, 325, 391, 540
NlaIII CATG 1 cut(s) 392
NlaIV GGNNCC 2 cut(s) 364, 402
OliI CACNNNNGTG 1 cut(s) 258
PciSI GCTCTTC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 158, 195
Ple19I CGATCG 1 cut(s) 112
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PshBI ATTAAT 1 cut(s) 585
PspN4I GGNNCC 2 cut(s) 364, 402
PspPI GGNCC 1 cut(s) 362
PsuI RGATCY 1 cut(s) 540
PvuI CGATCG 1 cut(s) 112
RsaI GTAC 3 cut(s) 299, 488, 648
RsaNI GTAC 3 cut(s) 298, 487, 647
RseI CAYNNNNRTG 2 cut(s) 258, 456
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 2 cut(s) 157, 194
Sau3AI GATC 4 cut(s) 109, 325, 391, 540
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 587
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 2 cut(s) 258, 456
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 4 cut(s) 102, 123, 131, 374
SsiI CCGC 3 cut(s) 263, 272, 544
TaaI ACNGT 3 cut(s) 179, 502, 651
TaqI TCGA 2 cut(s) 108, 354
TasI AATT 4 cut(s) 102, 123, 131, 374
TatI WGTACW 1 cut(s) 646
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 1 cut(s) 182
TseI GCWGC 2 cut(s) 156, 193
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 2 cut(s) 340, 603
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 362
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.