Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000380

Physical Location & Seq

Genomic Coordinates Forward (+)

49830794 .. 49846012

Gene Structure 15219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG270100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGTTGCGAAGCTTGCTGACCCTGGATATGCATTTCAACTCTCTTCTTCTTTCCATTCTGTTGGTTTGAGTCTATCATATGAAGTGTTTTCCTATTTCAAAACAACCATTACTTCTTCCTCACCAGCTCATCCAGAATTCATATTTCTGCAAGAACCAGAGGATGGTGGCAAACTCTCAATTGGTGAAAATATGATAGATGCTGCTGGGACTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACAAGACTGCAAATCTACCTTCCAAATACATACGAGACAGTGCATTTGAACAGCAATAAACTATTTTTTATTAAACATGCAATTAGCCTTTGTACAGTAACACAAAAGAGTACCAGGATCCAGTACATTTTCCAGTCAATTTTTGTAAAGAGCTTGCAGGAAGTAGATCCCTGTGACGATGTAACTGATGATGATATTCGAACGGCCATTCAAAATGCATCTGGTGCAAGAAATGCTTTATTTGTGCCTGAGGTCCCATTTGAAGTTTTAGTCAGAAGACAGATTGCACGCTTGTTAGACCCAAGCTTTCAGTGTCTTCGTTTTGTTTATGAGGAACTGGTTAAGATTAGTCGCACTTGTGAGGTAACTGAGTTGCAAAGGTTTCCAGCATTGAGAATGCGTTTGGATGAAGTCATGGTAAACTTTTTGCGTGACGGTGCACAGCCTGCTGAGAGAATGATAGAAAATCTTATTGAGATGGAGGTAGATTATACAAACACTTCGCACCCAAATTTTTTAGGTGGGAACAGAGCTGCTGAGATTGCTATGCCTGAGTTGAAATCACCACAGATATCTCTGGGCATAACGGATGCTGAAGCCCAAACTTCTCGGGTGGCTCGGGCAAAGATTGGACAATTACCAAATCAGGGAAGTCGTTCACAGCTGAATAACAATAAACCTGTATCTGTTAAAGAGAACCTGTTTGAAGAACTGTTGCAGGAGCAGGATGCACTTGTATTGAAAAGAAAACATAACCAAGAATTGCTCCGAGTTTTGGAACAATCTATGCAGACACTGGAGAAAGTTGAATTTGATGTCTCATCCCATACTTCAAGTTTTGGAACTGATGCTTCCACTGAACTTCCAAGAATTACAAGGACTTCACCACCCCATCAACAATACTCAACAACCAGTGGTGAGATGAGTCAATCTAGATACCATTCATTCTCCAGATCATTTGTTACCAACACAACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

410

Amino Acids

46.13

Weight (kDa)

5.69

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	121 - 263	5.4e-46	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09930
fragaria_vesca	FvH4_1g22620
malus_domestica	MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica	Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis	pycom15g29330
rosa_chinensis	RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata	RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora	Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa	Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha	Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana	Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	164
AclWI	GGATC	3 cut(s)	364, 377, 413
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	3 cut(s)	137, 763, 1061
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	3 cut(s)	346, 364, 377
AfiI	CCNNNNNNNGG	3 cut(s)	164, 899, 1027
AjnI	CCWGG	2 cut(s)	22, 365
AluBI	AGCT	7 cut(s)	13, 128, 405, 558, 785, 916, 1229
AluI	AGCT	7 cut(s)	13, 128, 405, 558, 785, 916, 1229
Alw21I	GWGCWC	1 cut(s)	694
Alw26I	GTCTC	2 cut(s)	281, 1075
Alw44I	GTGCAC	1 cut(s)	690
AlwI	GGATC	3 cut(s)	364, 377, 413
AlwNI	CAGNNNCTG	1 cut(s)	1048
Ama87I	CYCGRG	2 cut(s)	861, 870
AoxI	GGCC	1 cut(s)	456
ApaLI	GTGCAC	1 cut(s)	690
ApeKI	GCWGC	2 cut(s)	203, 785
ApoI	RAATTY	3 cut(s)	137, 763, 1061
ArsI	GACNNNNNNTTYG	2 cut(s)	280, 312
Asp700I	GAANNNNTTC	1 cut(s)	907
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	5 cut(s)	114, 197, 807, 1128, 1181
AsuII	TTCGAA	1 cut(s)	451
AvaI	CYCGRG	2 cut(s)	861, 870
AvaII	GGWCC	1 cut(s)	505
AxyI	CCTNAGG	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	535, 560
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	2 cut(s)	190, 772
BccI	CCATC	3 cut(s)	158, 724, 1152
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	2 cut(s)	24, 367
BcoDI	GTCTC	2 cut(s)	281, 1075
BfaI	CTAG	1 cut(s)	1185
BisI	GCNGC	2 cut(s)	204, 786
BlsI	GCNGC	2 cut(s)	205, 787
Bme1390I	CCNGG	2 cut(s)	24, 367
Bme18I	GGWCC	1 cut(s)	505
BmeT110I	CYCGRG	2 cut(s)	861, 870
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	2 cut(s)	371, 507
BmrFI	CCNGG	2 cut(s)	24, 367
BmsI	GCATC	5 cut(s)	190, 479, 832, 970, 1090
BpiI	GAAGAC	2 cut(s)	535, 560
BpmI	CTGGAG	2 cut(s)	1070, 1186
Bpu14I	TTCGAA	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 899, 1027
Bse1I	ACTGG	5 cut(s)	373, 385, 594, 1053, 1164
Bse21I	CCTNAGG	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	24, 367
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	6 cut(s)	130, 169, 664, 847, 985, 1073
BseLI	CCNNNNNNNGG	3 cut(s)	164, 899, 1027
BseMII	CTCAG	5 cut(s)	492, 612, 693, 780, 795
BseNI	ACTGG	5 cut(s)	373, 385, 594, 1053, 1164
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	2 cut(s)	190, 772
BseYI	CCCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	694
BsiHKCI	CYCGRG	2 cut(s)	861, 870
BslFI	GGGAC	2 cut(s)	223, 491
BslI	CCNNNNNNNGG	3 cut(s)	164, 899, 1027
BsmAI	GTCTC	2 cut(s)	281, 1075
BsmFI	GGGAC	2 cut(s)	223, 491
BsmI	GAATGC	1 cut(s)	654
BsnI	GGCC	1 cut(s)	458
BsoBI	CYCGRG	2 cut(s)	861, 870
Bsp119I	TTCGAA	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	694
Bsp1407I	TGTACA	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	369, 418, 1205
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	5 cut(s)	493, 613, 694, 781, 796
BspLI	GGNNCC	2 cut(s)	371, 507
BspPI	GGATC	3 cut(s)	364, 377, 413
BspT104I	TTCGAA	1 cut(s)	451
BsrGI	TGTACA	1 cut(s)	344
BsrI	ACTGG	5 cut(s)	373, 385, 594, 1053, 1164
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	369, 418, 1205
Bst2UI	CCWGG	2 cut(s)	24, 367
Bst4CI	ACNGT	4 cut(s)	292, 349, 689, 966
Bst6I	CTCTTC	1 cut(s)	49
BstAPI	GCANNNNNTGC	3 cut(s)	476, 485, 698
BstAUI	TGTACA	1 cut(s)	344
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	4 cut(s)	15, 407, 541, 699
BstDEI	CTNAG	5 cut(s)	501, 621, 702, 789, 804
BstF5I	GGATG	6 cut(s)	130, 169, 664, 847, 985, 1073
BstKTI	GATC	3 cut(s)	372, 421, 1208
BstMAI	GTCTC	2 cut(s)	281, 1075
BstMBI	GATC	3 cut(s)	369, 418, 1205
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 212, 476, 485, 698, 794
BstNI	CCWGG	2 cut(s)	24, 367
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	22, 365
BstSLI	GKGCMC	1 cut(s)	694
BstV1I	GCAGC	2 cut(s)	190, 772
BstV2I	GAAGAC	2 cut(s)	535, 560
BstX2I	RGATCY	2 cut(s)	369, 418
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	2 cut(s)	369, 418
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	458
BtsCI	GGATG	6 cut(s)	130, 169, 664, 847, 985, 1073
BtsIMutI	CAGTG	5 cut(s)	297, 569, 1046, 1107, 1171
Cac8I	GCNNGC	4 cut(s)	15, 407, 541, 699
CaiI	CAGNNNCTG	1 cut(s)	1048
Cfr13I	GGNCC	1 cut(s)	505
Csp6I	GTAC	3 cut(s)	345, 363, 376
CviAII	CATG	2 cut(s)	329, 667
CviQI	GTAC	3 cut(s)	345, 363, 376
DdeI	CTNAG	5 cut(s)	501, 621, 702, 789, 804
DpnI	GATC	3 cut(s)	371, 420, 1207
DpnII	GATC	3 cut(s)	369, 418, 1205
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco32I	GATATC	1 cut(s)	825
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	867
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	2 cut(s)	861, 870
EcoO109I	RGGNCCY	1 cut(s)	505
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	22, 365
EcoRV	GATATC	1 cut(s)	825
EcoT22I	ATGCAT	2 cut(s)	34, 472
FaeI	CATG	2 cut(s)	332, 670
FalI	AAGNNNNNCTT	2 cut(s)	472, 504
FaqI	GGGAC	2 cut(s)	223, 491
FatI	CATG	2 cut(s)	328, 666
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	204, 786
FokI	GGATG	6 cut(s)	117, 176, 671, 854, 992, 1060
Fsp4HI	GCNGC	2 cut(s)	204, 786
FspBI	CTAG	1 cut(s)	1185
GluI	GCNGC	2 cut(s)	204, 786
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	2 cut(s)	1070, 1186
HaeIII	GGCC	1 cut(s)	458
Hin1II	CATG	2 cut(s)	332, 670
HindIII	AAGCTT	2 cut(s)	11, 556
HinfI	GANTC	2 cut(s)	70, 1177
HphI	GGTGA	5 cut(s)	114, 197, 807, 1128, 1181
Hpy166II	GTNNAC	3 cut(s)	673, 692, 911
Hpy188I	TCNGA	2 cut(s)	527, 1022
Hpy188III	TCNNGA	3 cut(s)	134, 1185, 1203
Hpy8I	GTNNAC	3 cut(s)	673, 692, 911
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	4 cut(s)	292, 349, 689, 966
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 212, 476, 485, 698, 794
HpyF3I	CTNAG	5 cut(s)	501, 621, 702, 789, 804
Hsp92II	CATG	2 cut(s)	332, 670
Kzo9I	GATC	3 cut(s)	369, 418, 1205
LmnI	GCTCC	2 cut(s)	973, 1023
Lsp1109I	GCAGC	2 cut(s)	190, 772
LweI	GCATC	5 cut(s)	190, 479, 832, 970, 1090
MaeI	CTAG	1 cut(s)	1185
MaeIII	GTNAC	6 cut(s)	349, 425, 433, 616, 683, 1213
MalI	GATC	3 cut(s)	371, 420, 1207
MboI	GATC	3 cut(s)	369, 418, 1205
MboII	GAAGA	6 cut(s)	36, 39, 108, 540, 560, 971
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	2 cut(s)	369, 418
MhlI	GDGCHC	1 cut(s)	694
MluCI	AATT	9 cut(s)	137, 180, 333, 390, 763, 887, 1013, 1061, 1122
MlyI	GAGTC	2 cut(s)	79, 1186
MnlI	CCTC	6 cut(s)	130, 154, 496, 577, 607, 727
Mph1103I	ATGCAT	2 cut(s)	34, 472
MroXI	GAANNNNTTC	1 cut(s)	907
MseI	TTAA	4 cut(s)	249, 324, 594, 942
MspA1I	CMGCKG	1 cut(s)	916
MspR9I	CCNGG	2 cut(s)	24, 367
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	654
MvaI	CCWGG	2 cut(s)	24, 367
MwoI	GCNNNNNNNGC	6 cut(s)	14, 212, 476, 485, 698, 794
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	3 cut(s)	369, 418, 1205
NlaIII	CATG	2 cut(s)	332, 670
NlaIV	GGNNCC	2 cut(s)	371, 507
NmuCI	GTSAC	2 cut(s)	425, 683
NsiI	ATGCAT	2 cut(s)	34, 472
NspI	RCATGY	1 cut(s)	332
NspV	TTCGAA	1 cut(s)	451
PctI	GAATGC	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	907
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	205, 787
PleI	GAGTC	2 cut(s)	78, 1185
PpsI	GAGTC	2 cut(s)	78, 1185
PpuMI	RGGWCCY	1 cut(s)	505
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	22, 365
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	2 cut(s)	22, 365
PspN4I	GGNNCC	2 cut(s)	371, 507
PspPI	GGNCC	1 cut(s)	505
PspPPI	RGGWCCY	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	1048
PsuI	RGATCY	2 cut(s)	369, 418
PvuII	CAGCTG	1 cut(s)	916
RsaI	GTAC	3 cut(s)	346, 364, 377
RsaNI	GTAC	3 cut(s)	345, 363, 376
SaqAI	TTAA	4 cut(s)	249, 324, 594, 942
SatI	GCNGC	2 cut(s)	204, 786
Sau3AI	GATC	3 cut(s)	369, 418, 1205
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	2 cut(s)	79, 1186
ScrFI	CCNGG	2 cut(s)	24, 367
SduI	GDGCHC	1 cut(s)	694
SfaNI	GCATC	5 cut(s)	190, 479, 832, 970, 1090
SfuI	TTCGAA	1 cut(s)	451
SinI	GGWCC	1 cut(s)	505
Sse9I	AATT	9 cut(s)	137, 180, 333, 390, 763, 887, 1013, 1061, 1122
SspMI	CTAG	1 cut(s)	1185
StyD4I	CCNGG	2 cut(s)	22, 365
TaaI	ACNGT	4 cut(s)	292, 349, 689, 966
TaqI	TCGA	1 cut(s)	451
TasI	AATT	9 cut(s)	137, 180, 333, 390, 763, 887, 1013, 1061, 1122
TatI	WGTACW	2 cut(s)	344, 375
Tru1I	TTAA	4 cut(s)	249, 324, 594, 942
Tru9I	TTAA	4 cut(s)	249, 324, 594, 942
TscAI	CASTG	5 cut(s)	297, 569, 1053, 1114, 1171
TseFI	GTSAC	2 cut(s)	425, 683
TseI	GCWGC	2 cut(s)	203, 785
Tsp45I	GTSAC	2 cut(s)	425, 683
TspDTI	ATGAA	4 cut(s)	96, 130, 675, 1185
TspGWI	ACGGA	1 cut(s)	854
TspRI	CASTG	5 cut(s)	297, 569, 1053, 1114, 1171
Van91I	CCANNNNNTGG	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	690
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	3 cut(s)	137, 763, 1061
XbaI	TCTAGA	1 cut(s)	1184
XceI	RCATGY	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	907
XspI	CTAG	1 cut(s)	1185
Zsp2I	ATGCAT	2 cut(s)	34, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.