Rh5AG478400

Outer envelope pore protein 37

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
82236957 .. 82249189
12233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG478400.1

Sequence Viewer

Length: 1002 bp
ATGAGCTCTAGAGACTATTTAGTAGTTGGTTCAAACATTCTATATTGTCATAATGTAGAGGATGGTGGCAAACTCTCAATTGGTGAAAATATGATAGATGCTGCTGGGACTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACAAGACTGCAAATCTACCTTCCAAATACATACGAGACAGTGCATTTGAACAGCAATCTCTTCGTTCAACAAGCATTATGCGTGGCCAAGCTGAAGGTGTTGTTCAACAACAACCACAAGGGTGCGGTGTCTCCGCCTCAGGTGTCATTTAAGTCTCAGTACCTCTCCATTCACTACAACTTTGAAGATCAGTCTACCCTCCCCAACAGCTCCGTCGATGTTGGTCCCAAATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGGCAACTATGGTTGCGAAGCTTGCTGACCCTGGATATGCATTTCAACTCTCTTCTTCTTTCCATTCTGTTGGTTTGAGTCTATCATATGAAGTGTTTTCCTATTTCAAAACAACCATTACTTCTTCCTCACCAGCTCATCCAGAATTCATATTTCTGCAAGAACCAGAGGATGGTGGCAAACTCTCAATTGGTGAAAATATGATAGATGCTGCTGGGACTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACAAGACTGCAACTCTTCGATTTCACCTACCACATCCATGGCGTCCTCTCTTCACCCAAACCAGATGACCTTCCTCAGACCCGTATCCGGATCACTCACAACCACGCCCATGCCCACCCCCACTGTAGTCGGCGTTCCTGTACGGTGTGGCCACAGCTGTCGATCCTTCAAAACCACCAATGCATGATGGTGCTTGAGCAAAAAGAACAGCGACCCCACCCGAAACTGATCGAAACAGACCTCTGGCATCATGGAGTACCTTCCCCTGGGGAGGTACCGCTTCCAGAGACTGGTCGATTTGGAGAGGATTTCGATTAA

Protein Analysis

333

Amino Acids

37.05

Weight (kDa)

6.3

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 958
AccB1I GGYRCC 1 cut(s) 958
AccB7I CCANNNNNTGG 2 cut(s) 596, 974
AccI GTMKAC 1 cut(s) 344
AccIII TCCGGA 1 cut(s) 771
AciI CCGC 3 cut(s) 275, 284, 962
AclWI GGATC 2 cut(s) 782, 841
AcoI YGGCCR 2 cut(s) 234, 833
AcsI RAATTY 1 cut(s) 569
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 726
AfaI GTAC 4 cut(s) 311, 826, 942, 960
AfiI CCNNNNNNNGG 5 cut(s) 596, 771, 950, 955, 974
AjnI CCWGG 2 cut(s) 454, 949
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AleI CACNNNNGTG 1 cut(s) 270
AluBI AGCT 6 cut(s) 6, 241, 360, 445, 560, 841
AluI AGCT 6 cut(s) 6, 241, 360, 445, 560, 841
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 5 cut(s) 6, 179, 285, 309, 965
AlwI GGATC 2 cut(s) 782, 841
AlwNI CAGNNNCTG 1 cut(s) 974
Aor13HI TCCGGA 1 cut(s) 771
AoxI GGCC 2 cut(s) 234, 833
ApeKI GCWGC 2 cut(s) 101, 635
ApoI RAATTY 1 cut(s) 569
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
Asp718I GGTACC 1 cut(s) 958
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 5 cut(s) 95, 546, 629, 700, 729
AvaII GGWCC 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 288
BalI TGGCCA 2 cut(s) 236, 835
BanI GGYRCC 1 cut(s) 958
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 88, 622
BccI CCATC 3 cut(s) 56, 590, 865
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 2 cut(s) 456, 951
BciVI GTATCC 1 cut(s) 779
BcoDI GTCTC 5 cut(s) 6, 179, 285, 309, 965
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 808
BfuI GTATCC 1 cut(s) 779
BisI GCNGC 2 cut(s) 102, 636
BlsI GCNGC 2 cut(s) 103, 637
Bme1390I CCNGG 2 cut(s) 456, 951
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 376, 960
BmrFI CCNGG 2 cut(s) 456, 951
BmsI GCATC 3 cut(s) 88, 622, 940
BpuEI CTTGAG 2 cut(s) 392, 899
BsaHI GRCGYC 1 cut(s) 726
BsaJI CCNNGG 4 cut(s) 454, 721, 949, 950
BsaWI WCCGGW 1 cut(s) 771
Bsc4I CCNNNNNNNGG 5 cut(s) 596, 771, 950, 955, 974
Bse1I ACTGG 1 cut(s) 979
Bse21I CCTNAGG 1 cut(s) 288
BseAI TCCGGA 1 cut(s) 771
BseBI CCWGG 2 cut(s) 456, 951
BseDI CCNNGG 4 cut(s) 454, 721, 949, 950
BseGI GGATG 4 cut(s) 67, 562, 601, 717
BseLI CCNNNNNNNGG 5 cut(s) 596, 771, 950, 955, 974
BseMII CTCAG 3 cut(s) 302, 320, 773
BseNI ACTGG 1 cut(s) 979
BseXI GCAGC 2 cut(s) 88, 622
BseYI CCCAGC 2 cut(s) 104, 638
BshFI GGCC 2 cut(s) 236, 835
BshNI GGYRCC 1 cut(s) 958
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 772
BslFI GGGAC 3 cut(s) 121, 360, 655
BslI CCNNNNNNNGG 5 cut(s) 596, 771, 950, 955, 974
BsmAI GTCTC 5 cut(s) 6, 179, 285, 309, 965
BsmFI GGGAC 3 cut(s) 121, 360, 655
BsnI GGCC 2 cut(s) 236, 835
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 771
Bsp143I GATC 5 cut(s) 337, 403, 774, 846, 912
Bsp19I CCATGG 1 cut(s) 721
BspACI CCGC 3 cut(s) 275, 284, 962
BspANI GGCC 2 cut(s) 236, 835
BspCNI CTCAG 3 cut(s) 301, 319, 772
BspEI TCCGGA 1 cut(s) 771
BspLI GGNNCC 2 cut(s) 376, 960
BspPI GGATC 2 cut(s) 782, 841
BspT107I GGYRCC 1 cut(s) 958
BsrI ACTGG 1 cut(s) 979
BssECI CCNNGG 4 cut(s) 454, 721, 949, 950
BssMI GATC 5 cut(s) 337, 403, 774, 846, 912
BssNI GRCGYC 1 cut(s) 726
BssT1I CCWWGG 1 cut(s) 721
Bst2UI CCWGG 2 cut(s) 456, 951
Bst4CI ACNGT 3 cut(s) 190, 809, 829
Bst6I CTCTTC 4 cut(s) 215, 481, 704, 739
BstACI GRCGYC 1 cut(s) 726
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 3 cut(s) 288, 306, 759
BstDSI CCRYGG 1 cut(s) 721
BstF5I GGATG 4 cut(s) 67, 562, 601, 717
BstKTI GATC 5 cut(s) 340, 406, 777, 849, 915
BstMAI GTCTC 5 cut(s) 6, 179, 285, 309, 965
BstMBI GATC 5 cut(s) 337, 403, 774, 846, 912
BstMWI GCNNNNNNNGC 3 cut(s) 110, 446, 644
BstNI CCWGG 2 cut(s) 456, 951
BstSCI CCNGG 2 cut(s) 454, 949
BstSFI CTRYAG 1 cut(s) 808
BstV1I GCAGC 2 cut(s) 88, 622
BstXI CCANNNNNNTGG 2 cut(s) 494, 722
Bsu36I CCTNAGG 1 cut(s) 288
BsuI GTATCC 1 cut(s) 779
BsuRI GGCC 2 cut(s) 236, 835
BtgI CCRYGG 1 cut(s) 721
BtsCI GGATG 4 cut(s) 67, 562, 601, 717
BtsIMutI CAGTG 2 cut(s) 195, 805
Cac8I GCNNGC 1 cut(s) 447
CaiI CAGNNNCTG 1 cut(s) 974
Cfr13I GGNCC 1 cut(s) 374
CseI GACGC 1 cut(s) 715
Csp6I GTAC 4 cut(s) 310, 825, 941, 959
CviAII CATG 5 cut(s) 401, 722, 794, 868, 935
CviQI GTAC 4 cut(s) 310, 825, 941, 959
DdeI CTNAG 3 cut(s) 288, 306, 759
DpnI GATC 5 cut(s) 339, 405, 776, 848, 914
DpnII GATC 5 cut(s) 337, 403, 774, 846, 912
EaeI YGGCCR 2 cut(s) 234, 833
Eam1104I CTCTTC 4 cut(s) 215, 481, 704, 739
EarI CTCTTC 4 cut(s) 215, 481, 704, 739
EciI GGCGGA 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 721
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 374
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 569
EcoRII CCWGG 2 cut(s) 454, 949
EcoT14I CCWWGG 1 cut(s) 721
EcoT22I ATGCAT 2 cut(s) 466, 869
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 721
FaeI CATG 5 cut(s) 404, 725, 797, 871, 938
FaqI GGGAC 3 cut(s) 121, 360, 655
FatI CATG 5 cut(s) 400, 721, 793, 867, 934
FauNDI CATATG 1 cut(s) 511
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 2 cut(s) 102, 636
FokI GGATG 4 cut(s) 74, 549, 608, 704
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 102, 636
FspBI CTAG 1 cut(s) 9
GluI GCNGC 2 cut(s) 102, 636
GsaI CCCAGC 2 cut(s) 108, 642
HaeIII GGCC 2 cut(s) 236, 835
HapII CCGG 1 cut(s) 772
HgaI GACGC 1 cut(s) 715
Hin1I GRCGYC 1 cut(s) 726
Hin1II CATG 5 cut(s) 404, 725, 797, 871, 938
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 1 cut(s) 502
HpaII CCGG 1 cut(s) 772
HphI GGTGA 5 cut(s) 95, 546, 629, 700, 729
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 1 cut(s) 762
Hpy188III TCNNGA 4 cut(s) 9, 566, 772, 968
Hpy8I GTNNAC 1 cut(s) 345
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 5 cut(s) 179, 238, 764, 860, 954
HpyCH4III ACNGT 3 cut(s) 190, 809, 829
HpyCH4V TGCA 7 cut(s) 160, 193, 385, 464, 583, 694, 867
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 446, 644
HpyF3I CTNAG 3 cut(s) 288, 306, 759
Hsp92I GRCGYC 1 cut(s) 726
Hsp92II CATG 5 cut(s) 404, 725, 797, 871, 938
Kpn2I TCCGGA 1 cut(s) 771
KpnI GGTACC 1 cut(s) 962
Kzo9I GATC 5 cut(s) 337, 403, 774, 846, 912
LmnI GCTCC 1 cut(s) 365
Lsp1109I GCAGC 2 cut(s) 88, 622
LweI GCATC 3 cut(s) 88, 622, 940
MaeI CTAG 1 cut(s) 9
MalI GATC 5 cut(s) 339, 405, 776, 848, 914
MboI GATC 5 cut(s) 337, 403, 774, 846, 912
MboII GAAGA 7 cut(s) 202, 347, 468, 471, 540, 691, 726
MfeI CAATTG 2 cut(s) 78, 612
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 2 cut(s) 236, 835
MluCI AATT 5 cut(s) 78, 380, 386, 569, 612
MluNI TGGCCA 2 cut(s) 236, 835
MlyI GAGTC 1 cut(s) 511
Mox20I TGGCCA 2 cut(s) 236, 835
Mph1103I ATGCAT 2 cut(s) 466, 869
MroI TCCGGA 1 cut(s) 771
MscI TGGCCA 2 cut(s) 236, 835
MseI TTAA 4 cut(s) 147, 300, 681, 1000
MslI CAYNNNNRTG 4 cut(s) 270, 720, 792, 872
Msp20I TGGCCA 2 cut(s) 236, 835
MspA1I CMGCKG 1 cut(s) 841
MspI CCGG 1 cut(s) 772
MspR9I CCNGG 2 cut(s) 456, 951
MunI CAATTG 2 cut(s) 78, 612
MvaI CCWGG 2 cut(s) 456, 951
MwoI GCNNNNNNNGC 3 cut(s) 110, 446, 644
NcoI CCATGG 1 cut(s) 721
NdeI CATATG 1 cut(s) 511
NdeII GATC 5 cut(s) 337, 403, 774, 846, 912
NlaIII CATG 5 cut(s) 404, 725, 797, 871, 938
NlaIV GGNNCC 2 cut(s) 376, 960
NsiI ATGCAT 2 cut(s) 466, 869
OliI CACNNNNGTG 1 cut(s) 270
PasI CCCWGGG 1 cut(s) 950
PflMI CCANNNNNTGG 2 cut(s) 596, 974
PkrI GCNGC 2 cut(s) 103, 637
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 454, 949
PspFI CCCAGC 2 cut(s) 104, 638
PspGI CCWGG 2 cut(s) 454, 949
PspN4I GGNNCC 2 cut(s) 376, 960
PspPI GGNCC 1 cut(s) 374
PsrI GAACNNNNNNTAC 2 cut(s) 802, 834
PstNI CAGNNNCTG 1 cut(s) 974
PvuII CAGCTG 1 cut(s) 841
RsaI GTAC 4 cut(s) 311, 826, 942, 960
RsaNI GTAC 4 cut(s) 310, 825, 941, 959
RseI CAYNNNNRTG 4 cut(s) 270, 720, 792, 872
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 4 cut(s) 147, 300, 681, 1000
SatI GCNGC 2 cut(s) 102, 636
Sau3AI GATC 5 cut(s) 337, 403, 774, 846, 912
Sau96I GGNCC 1 cut(s) 374
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 2 cut(s) 456, 951
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 3 cut(s) 88, 622, 940
SfcI CTRYAG 1 cut(s) 808
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 4 cut(s) 270, 720, 792, 872
SmlI CTYRAG 2 cut(s) 407, 878
SmoI CTYRAG 2 cut(s) 407, 878
Sse9I AATT 5 cut(s) 78, 380, 386, 569, 612
SsiI CCGC 3 cut(s) 275, 284, 962
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 454, 949
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 3 cut(s) 190, 809, 829
TaqI TCGA 6 cut(s) 366, 702, 845, 915, 979, 996
TasI AATT 5 cut(s) 78, 380, 386, 569, 612
Tru1I TTAA 4 cut(s) 147, 300, 681, 1000
Tru9I TTAA 4 cut(s) 147, 300, 681, 1000
TscAI CASTG 2 cut(s) 195, 812
TseI GCWGC 2 cut(s) 101, 635
TspDTI ATGAA 2 cut(s) 528, 562
TspGWI ACGGA 2 cut(s) 352, 380
TspRI CASTG 2 cut(s) 195, 812
Van91I CCANNNNNTGG 2 cut(s) 596, 974
VpaK11BI GGWCC 1 cut(s) 374
XapI RAATTY 1 cut(s) 569
XbaI TCTAGA 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 344
XspI CTAG 1 cut(s) 9
Zsp2I ATGCAT 2 cut(s) 466, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.