RchiOBHm_Chr2g0116821

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000380
Physical Location & Seq
Forward (+)
29040583 .. 29041808
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48983

Sequence Viewer

Length: 705 bp
ATGTCTACCTGCAAAAGTTTACCTACTTTGTCATCCTGCTGGGTTTGGAATCAGGTCGGAGGAAGAAGAGGGTTGCTAGCTACAAGGTGTACACTGTGGAGGGAAGCTGAAAGGGACTCTCAGGAAGAGCTAATATGGTCTGCTTTTAAGGAGGAGATGGAGGTGCCAGAGAGGCTGGAGAGGGTGCAAAAGGCTTTGGAGAGTGTTGTGGAGGATATGGACTTGATGGGGCGGCTTTTGGATGAGCTTGGTAAGCTTCAGAATCAGGCGCAGGAGTGTGACTTGAGTATGGTAGATGCAAAGATTAGTAAGGTGATGCCGGAACTTGGGTTTGCGCCTGAGGATGGGGATAGGTTGGTGGCTTCATTTAGTAGTGGCTGGCAGATGAGGATGTCACCTGGGAAGATTTTGCTTCAGCACCTTGATTTACTACTGCTGGACGAGCCTACAAATCACCTTGACCTTGACACAATCGAGTGGCTCGAAGATTATCTCAATCAGCAGGATGTGCCAATGGTTATCATATCTTATGACCGAGCTTTTCTTGATCAATTGTGTACAAATATAGTGGAAACTGATTTGGGTGTCTCCAAGACGTATGAGGGAAATTATTCTAGTATTATATTACAAAGGCAACATGGATTGAAAGTCAAAATGCTGCTTGGGAGAAGCAGCATAAGGAAACTGAGCACACAAAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

234

Amino Acids

26.75

Weight (kDa)

4.84

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 232
AcuI CTGAAG 2 cut(s) 242, 398
AfaI GTAC 2 cut(s) 91, 559
AfiI CCNNNNNNNGG 2 cut(s) 326, 344
AgsI TTSAA 1 cut(s) 646
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 6 cut(s) 80, 107, 130, 247, 256, 539
AluI AGCT 6 cut(s) 80, 107, 130, 247, 256, 539
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 1 cut(s) 592
ApeKI GCWGC 2 cut(s) 658, 672
Asp700I GAANNNNTTC 1 cut(s) 610
AspLEI GCGC 2 cut(s) 271, 337
AsuHPI GGTGA 3 cut(s) 325, 387, 446
AsuNHI GCTAGC 1 cut(s) 76
AxyI CCTNAGG 1 cut(s) 339
BanI GGYRCC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 692
BbvI GCAGC 2 cut(s) 645, 684
BccI CCATC 3 cut(s) 151, 220, 338
BciT130I CCWGG 1 cut(s) 399
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 1 cut(s) 592
BfaI CTAG 2 cut(s) 77, 615
BfuAI ACCTGC 1 cut(s) 17
BglI GCCNNNNNGGC 1 cut(s) 172
BisI GCNGC 3 cut(s) 233, 659, 673
BlsI GCNGC 3 cut(s) 234, 660, 674
Bme1390I CCNGG 1 cut(s) 399
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 2 cut(s) 286, 306
BmtI GCTAGC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 398
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 344
Bse21I CCTNAGG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 5 cut(s) 32, 247, 349, 396, 511
BseLI CCNNNNNNNGG 2 cut(s) 326, 344
BseMII CTCAG 3 cut(s) 134, 330, 677
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 645, 684
BseYI CCCAGC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 692
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 326, 344
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 692
Bsp1407I TGTACA 2 cut(s) 89, 557
Bsp143I GATC 1 cut(s) 547
BspACI CCGC 1 cut(s) 232
BspCNI CTCAG 3 cut(s) 133, 331, 678
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 17
BspOI GCTAGC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 163
BsrGI TGTACA 2 cut(s) 89, 557
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 2 cut(s) 61, 120
BstAPI GCANNNNNTGC 1 cut(s) 508
BstAUI TGTACA 2 cut(s) 89, 557
BstC8I GCNNGC 2 cut(s) 78, 380
BstDEI CTNAG 3 cut(s) 120, 339, 686
BstF5I GGATG 5 cut(s) 32, 247, 349, 396, 511
BstHHI GCGC 2 cut(s) 271, 337
BstKTI GATC 1 cut(s) 550
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 1 cut(s) 547
BstMWI GCNNNNNNNGC 4 cut(s) 172, 253, 442, 508
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 2 cut(s) 645, 684
Bsu36I CCTNAGG 1 cut(s) 339
BtsCI GGATG 5 cut(s) 32, 247, 349, 396, 511
BtsIMutI CAGTG 1 cut(s) 92
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 78, 380
CfoI GCGC 2 cut(s) 271, 337
Csp6I GTAC 2 cut(s) 90, 558
CspCI CAANNNNNGTGG 2 cut(s) 549, 584
CviAII CATG 1 cut(s) 638
CviQI GTAC 2 cut(s) 90, 558
DdeI CTNAG 3 cut(s) 120, 339, 686
DpnI GATC 1 cut(s) 549
DpnII GATC 1 cut(s) 547
Eam1104I CTCTTC 2 cut(s) 61, 120
EarI CTCTTC 2 cut(s) 61, 120
Eco57I CTGAAG 2 cut(s) 242, 398
Eco81I CCTNAGG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 397
FaeI CATG 1 cut(s) 641
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 637
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 233, 659, 673
FokI GGATG 5 cut(s) 19, 254, 356, 403, 518
Fsp4HI GCNGC 3 cut(s) 233, 659, 673
FspBI CTAG 2 cut(s) 77, 615
GlaI GCGC 2 cut(s) 270, 336
GluI GCNGC 3 cut(s) 233, 659, 673
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 197
HapII CCGG 1 cut(s) 320
HhaI GCGC 2 cut(s) 271, 337
Hin1II CATG 1 cut(s) 641
Hin6I GCGC 2 cut(s) 269, 335
HinP1I GCGC 2 cut(s) 269, 335
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 3 cut(s) 49, 116, 262
HpaII CCGG 1 cut(s) 320
HphI GGTGA 3 cut(s) 325, 387, 446
Hpy166II GTNNAC 5 cut(s) 6, 20, 90, 92, 558
Hpy188I TCNGA 2 cut(s) 59, 261
Hpy188III TCNNGA 2 cut(s) 122, 545
Hpy8I GTNNAC 5 cut(s) 6, 20, 90, 92, 558
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 3 cut(s) 12, 187, 299
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 253, 442, 508
HpyF3I CTNAG 3 cut(s) 120, 339, 686
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 1 cut(s) 641
HspAI GCGC 2 cut(s) 269, 335
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 1 cut(s) 547
LguI GCTCTTC 1 cut(s) 120
Lsp1109I GCAGC 2 cut(s) 645, 684
LweI GCATC 2 cut(s) 286, 306
MaeI CTAG 2 cut(s) 77, 615
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 2 cut(s) 278, 393
MalI GATC 1 cut(s) 549
MboI GATC 1 cut(s) 547
MboII GAAGA 5 cut(s) 75, 78, 137, 415, 497
MfeI CAATTG 1 cut(s) 551
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 2 cut(s) 551, 607
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 610
MseI TTAA 1 cut(s) 147
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 551
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 4 cut(s) 172, 253, 442, 508
NdeII GATC 1 cut(s) 547
NheI GCTAGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 641
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 2 cut(s) 278, 393
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PdmI GAANNNNTTC 1 cut(s) 610
PfeI GAWTC 2 cut(s) 49, 262
PkrI GCNGC 3 cut(s) 234, 660, 674
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 165
RsaI GTAC 2 cut(s) 91, 559
RsaNI GTAC 2 cut(s) 90, 558
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 3 cut(s) 233, 659, 673
Sau3AI GATC 1 cut(s) 547
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 692
SfaNI GCATC 2 cut(s) 286, 306
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 2 cut(s) 551, 607
SsiI CCGC 1 cut(s) 232
SspMI CTAG 2 cut(s) 77, 615
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 599
TaqI TCGA 2 cut(s) 474, 483
TaqII GACCGA 1 cut(s) 549
TasI AATT 2 cut(s) 551, 607
TatI WGTACW 2 cut(s) 89, 557
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 2 cut(s) 49, 262
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 2 cut(s) 278, 393
TseI GCWGC 2 cut(s) 658, 672
Tsp45I GTSAC 2 cut(s) 278, 393
TspDTI ATGAA 1 cut(s) 354
TspRI CASTG 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 610
XspI CTAG 2 cut(s) 77, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.