Rh1CG024200

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000380
Physical Location & Seq
Reverse (-)
4552396 .. 4562101
9706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG024200.1

Sequence Viewer

Length: 429 bp
ATGCTCGAAATCGATAGTTACTGTACTTACATCAAGCTAGCCATTCGAGCATGGCAGAAGGCAGTTGACCTACTTATTCTGAATGGAGAGGATGGCGGTGAACTCTCAATTGGTGAAAATATGATAGCTGCTGCTGGGGCTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACAAGACTGCAAACTCGGATGGATCAAATTACACAACAGCTGAAATTTGGAATATCAGAGTTTGAAAACAATGTGAACGTGTCATCAGTACCTCAAGATCCAGACCACATATCCTCTACATATCAAGTTGACAAGGAGGGTGCAGAACAATTGGACCTGGAAAAGCAGGAAGCCATAGGTGTGCTTGATGGCTGTCACAGATTATACCGTCCTGGTTCTTATGTTATGCCCTGCTTGATTAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 SF1-HH

Protein Analysis

142

Amino Acids

15.76

Weight (kDa)

4.72

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AclWI GGATC 2 cut(s) 210, 272
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 2 cut(s) 25, 270
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 156, 245
AjnI CCWGG 2 cut(s) 336, 391
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AluBI AGCT 3 cut(s) 37, 128, 220
AluI AGCT 3 cut(s) 37, 128, 220
AlwI GGATC 2 cut(s) 210, 272
ApeKI GCWGC 3 cut(s) 128, 131, 140
ApoI RAATTY 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 110, 125
AsuNHI GCTAGC 1 cut(s) 37
AvaII GGWCC 1 cut(s) 334
BbvI GCAGC 3 cut(s) 115, 118, 127
BccI CCATC 3 cut(s) 86, 193, 362
BciT130I CCWGG 2 cut(s) 338, 393
BfaI CTAG 1 cut(s) 38
BisI GCNGC 3 cut(s) 129, 132, 141
BlsI GCNGC 3 cut(s) 130, 133, 142
Bme1390I CCNGG 2 cut(s) 338, 393
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmrFI CCNGG 2 cut(s) 338, 393
BmtI GCTAGC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 258
Bsa29I ATCGAT 1 cut(s) 12
BseBI CCWGG 2 cut(s) 338, 393
BseCI ATCGAT 1 cut(s) 12
BseGI GGATG 2 cut(s) 97, 204
BseXI GCAGC 3 cut(s) 115, 118, 127
BseYI CCCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 342
BshVI ATCGAT 1 cut(s) 12
Bsp143I GATC 2 cut(s) 202, 277
BspACI CCGC 1 cut(s) 96
BspDI ATCGAT 1 cut(s) 12
BspOI GCTAGC 1 cut(s) 41
BspPI GGATC 2 cut(s) 210, 272
BssMI GATC 2 cut(s) 202, 277
Bst2UI CCWGG 2 cut(s) 338, 393
Bst4CI ACNGT 2 cut(s) 23, 389
BstC8I GCNNGC 1 cut(s) 39
BstF5I GGATG 2 cut(s) 97, 204
BstKTI GATC 2 cut(s) 205, 280
BstMBI GATC 2 cut(s) 202, 277
BstMWI GCNNNNNNNGC 4 cut(s) 47, 137, 140, 146
BstNI CCWGG 2 cut(s) 338, 393
BstSCI CCNGG 2 cut(s) 336, 391
BstV1I GCAGC 3 cut(s) 115, 118, 127
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 12
BsuTUI ATCGAT 1 cut(s) 12
BtsCI GGATG 2 cut(s) 97, 204
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 334
ClaI ATCGAT 1 cut(s) 12
Csp6I GTAC 2 cut(s) 24, 269
CviAII CATG 1 cut(s) 51
CviJI RGCY 8 cut(s) 37, 41, 128, 140, 149, 220, 353, 372
CviKI_1 RGCY 8 cut(s) 37, 41, 128, 140, 149, 220, 353, 372
CviQI GTAC 2 cut(s) 24, 269
DpnI GATC 2 cut(s) 204, 279
DpnII GATC 2 cut(s) 202, 277
Eco47I GGWCC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 336, 391
FaeI CATG 1 cut(s) 54
FaiI YATR 8 cut(s) 52, 122, 290, 301, 356, 385, 402, 407
FatI CATG 1 cut(s) 50
Fnu4HI GCNGC 3 cut(s) 129, 132, 141
FokI GGATG 2 cut(s) 104, 211
Fsp4HI GCNGC 3 cut(s) 129, 132, 141
FspBI CTAG 1 cut(s) 38
GluI GCNGC 3 cut(s) 129, 132, 141
GsaI CCCAGC 1 cut(s) 138
Hin1II CATG 1 cut(s) 54
HincII GTYRAC 2 cut(s) 67, 310
HindII GTYRAC 2 cut(s) 67, 310
HphI GGTGA 2 cut(s) 110, 125
Hpy166II GTNNAC 4 cut(s) 67, 101, 256, 310
Hpy188I TCNGA 3 cut(s) 81, 198, 238
Hpy188III TCNNGA 2 cut(s) 275, 281
Hpy8I GTNNAC 4 cut(s) 67, 101, 256, 310
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 2 cut(s) 23, 389
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 190, 323
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 137, 140, 146
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 1 cut(s) 54
Kzo9I GATC 2 cut(s) 202, 277
LpnPI CCDG 8 cut(s) 120, 294, 323, 332, 350, 378, 405, 424
Lsp1109I GCAGC 3 cut(s) 115, 118, 127
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 17, 374
MalI GATC 2 cut(s) 204, 279
MboI GATC 2 cut(s) 202, 277
MfeI CAATTG 2 cut(s) 108, 329
MflI RGATCY 1 cut(s) 277
MluCI AATT 4 cut(s) 108, 207, 224, 329
MnlI CCTC 4 cut(s) 82, 282, 304, 310
MseI TTAA 2 cut(s) 177, 420
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 220
MspR9I CCNGG 2 cut(s) 338, 393
MunI CAATTG 2 cut(s) 108, 329
MvaI CCWGG 2 cut(s) 338, 393
MwoI GCNNNNNNNGC 4 cut(s) 47, 137, 140, 146
NdeII GATC 2 cut(s) 202, 277
NheI GCTAGC 1 cut(s) 37
NlaIII CATG 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 130, 133, 142
Psp6I CCWGG 2 cut(s) 336, 391
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 2 cut(s) 336, 391
PspPI GGNCC 1 cut(s) 334
PsuI RGATCY 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 220
RsaI GTAC 2 cut(s) 25, 270
RsaNI GTAC 2 cut(s) 24, 269
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 2 cut(s) 177, 420
SatI GCNGC 3 cut(s) 129, 132, 141
Sau3AI GATC 2 cut(s) 202, 277
Sau96I GGNCC 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 338, 393
SetI ASST 8 cut(s) 39, 72, 130, 222, 261, 274, 339, 361
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 4 cut(s) 108, 207, 224, 329
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 336, 391
TaaI ACNGT 2 cut(s) 23, 389
TaiI ACGT 1 cut(s) 261
TaqI TCGA 3 cut(s) 6, 12, 46
TasI AATT 4 cut(s) 108, 207, 224, 329
TatI WGTACW 1 cut(s) 23
Tru1I TTAA 2 cut(s) 177, 420
Tru9I TTAA 2 cut(s) 177, 420
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 3 cut(s) 128, 131, 140
Tsp45I GTSAC 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 1 cut(s) 224
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.