Rh3CG072500

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000380
Physical Location & Seq
Forward (+)
5493282 .. 5505530
12249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG072500.1

Sequence Viewer

Length: 657 bp
ATGGTTACCTCATCTCTATTTGGATATGGAGATCTGGAGATGTATCCCTGCTGGGTTTGGAATCAGGTCAAAGGAAGAAGATGGTTGCTAGCTACAAGGTGTACACTATGGAGGGAAGCTGAAAGGGAGTCTCAGGAAGAGCTAATATGGACTGCTTTTAAGGAGGAGATGGAGGTGTCAGAGAGGCTGGAGAGGGTACAAAAGGCGTTAGAGAATGCTGTGGAGGATATGGACTTGATGGTAAGGCTTTTGGATGAGCTTGGTAAGCTTCAAAATCAGGCGCAGGAGTGTGACTTTAGTATGGTGGATGCCAACATTAGTAAGTTGATGTCAGAACTTGGGTTTGCGCCTGAGGATGAGGATAGGTGGGTGGCTTCATTTAGTAGTGGTTGGCAGATGAGGATGTCACTTGGGAAGATTTTTCTTCAGTGCTTGCTGGGCTCTCTTCCTCCGGCTGAAGCAGCACCTCCTGGACTCTGGCCAGGGGAACTGACTCCGCTACTGGGTCAGGGTACTGGGCCGACTTCGGGTTGGGCGGGTTGTTGGTGCTTTGAGGGAAACCCAAAGCTACCAGCGAAGGAAGACGTAGATCGAGATGGTGATTTTGGGATGAATAAGAAAAAGATCCATTTAATGCTGAGATTGCGAAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

218

Amino Acids

24.86

Weight (kDa)

4.77

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 497, 536
AclWI GGATC 1 cut(s) 619
AcoI YGGCCR 1 cut(s) 479
AcuI CTGAAG 2 cut(s) 410, 477
AfaI GTAC 3 cut(s) 103, 198, 514
AfiI CCNNNNNNNGG 2 cut(s) 503, 527
AgsI TTSAA 1 cut(s) 272
AjnI CCWGG 2 cut(s) 469, 481
AluBI AGCT 7 cut(s) 92, 119, 142, 259, 268, 568, 651
AluI AGCT 7 cut(s) 92, 119, 142, 259, 268, 568, 651
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 619
AoxI GGCC 2 cut(s) 479, 518
ApeKI GCWGC 1 cut(s) 461
AspLEI GCGC 2 cut(s) 283, 349
AspS9I GGNCC 1 cut(s) 518
AsuHPI GGTGA 1 cut(s) 611
AsuNHI GCTAGC 1 cut(s) 88
AxyI CCTNAGG 1 cut(s) 351
BalI TGGCCA 1 cut(s) 481
BanII GRGCYC 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 588
BbvI GCAGC 1 cut(s) 473
BccI CCATC 4 cut(s) 75, 163, 232, 590
BciT130I CCWGG 2 cut(s) 471, 483
BciVI GTATCC 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 54
BglII AGATCT 1 cut(s) 31
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
Bme1390I CCNGG 2 cut(s) 471, 483
BmgT120I GGNCC 1 cut(s) 518
BmrFI CCNGG 2 cut(s) 471, 483
BmrI ACTGGG 2 cut(s) 512, 525
BmsI GCATC 1 cut(s) 298
BmtI GCTAGC 1 cut(s) 92
BmuI ACTGGG 2 cut(s) 512, 525
BpiI GAAGAC 1 cut(s) 588
BpmI CTGGAG 2 cut(s) 56, 209
BsaJI CCNNGG 1 cut(s) 482
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 527
Bse1I ACTGG 2 cut(s) 507, 520
Bse21I CCTNAGG 1 cut(s) 351
BseBI CCWGG 2 cut(s) 471, 483
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 5 cut(s) 259, 313, 361, 408, 615
BseLI CCNNNNNNNGG 2 cut(s) 503, 527
BseMII CTCAG 3 cut(s) 146, 342, 629
BseNI ACTGG 2 cut(s) 507, 520
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 473
BseYI CCCAGC 2 cut(s) 51, 436
BshFI GGCC 2 cut(s) 481, 520
BsiSI CCGG 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 503, 527
BsmAI GTCTC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 2 cut(s) 481, 520
Bsp1286I GDGCHC 1 cut(s) 443
Bsp1407I TGTACA 1 cut(s) 101
Bsp143I GATC 3 cut(s) 31, 589, 624
BspACI CCGC 2 cut(s) 497, 536
BspANI GGCC 2 cut(s) 481, 520
BspCNI CTCAG 3 cut(s) 145, 343, 630
BspOI GCTAGC 1 cut(s) 92
BspPI GGATC 1 cut(s) 619
BspQI GCTCTTC 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 101
BsrI ACTGG 2 cut(s) 507, 520
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 3 cut(s) 31, 589, 624
Bst2UI CCWGG 2 cut(s) 471, 483
Bst6I CTCTTC 2 cut(s) 132, 450
BstAUI TGTACA 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 90, 434
BstDEI CTNAG 3 cut(s) 132, 351, 638
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 5 cut(s) 259, 313, 361, 408, 615
BstHHI GCGC 2 cut(s) 283, 349
BstKTI GATC 3 cut(s) 34, 592, 627
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 3 cut(s) 31, 589, 624
BstMWI GCNNNNNNNGC 4 cut(s) 265, 438, 461, 643
BstNI CCWGG 2 cut(s) 471, 483
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 469, 481
BstV1I GCAGC 1 cut(s) 473
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 2 cut(s) 31, 624
BstYI RGATCY 2 cut(s) 31, 624
Bsu36I CCTNAGG 1 cut(s) 351
BsuI GTATCC 1 cut(s) 54
BsuRI GGCC 2 cut(s) 481, 520
BtsCI GGATG 5 cut(s) 259, 313, 361, 408, 615
BtsIMutI CAGTG 1 cut(s) 434
Cac8I GCNNGC 2 cut(s) 90, 434
CfoI GCGC 2 cut(s) 283, 349
Cfr13I GGNCC 1 cut(s) 518
Csp6I GTAC 3 cut(s) 102, 197, 513
CviQI GTAC 3 cut(s) 102, 197, 513
DdeI CTNAG 3 cut(s) 132, 351, 638
DpnI GATC 3 cut(s) 33, 591, 626
DpnII GATC 3 cut(s) 31, 589, 624
EaeI YGGCCR 1 cut(s) 479
Eam1104I CTCTTC 2 cut(s) 132, 450
EarI CTCTTC 2 cut(s) 132, 450
Eco24I GRGCYC 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 410, 477
Eco81I CCTNAGG 1 cut(s) 351
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 469, 481
EcoT38I GRGCYC 1 cut(s) 443
FaiI YATR 5 cut(s) 27, 109, 148, 230, 302
FauI CCCGC 1 cut(s) 529
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 5 cut(s) 266, 320, 368, 415, 622
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 89
GlaI GCGC 2 cut(s) 282, 348
GluI GCNGC 1 cut(s) 462
GsaI CCCAGC 2 cut(s) 55, 440
GsuI CTGGAG 2 cut(s) 56, 209
HaeIII GGCC 2 cut(s) 481, 520
HapII CCGG 1 cut(s) 452
HhaI GCGC 2 cut(s) 283, 349
Hin6I GCGC 2 cut(s) 281, 347
HinP1I GCGC 2 cut(s) 281, 347
HindIII AAGCTT 2 cut(s) 266, 649
HinfI GANTC 4 cut(s) 61, 128, 474, 493
HpaII CCGG 1 cut(s) 452
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 2 cut(s) 102, 104
Hpy188I TCNGA 2 cut(s) 181, 334
Hpy188III TCNNGA 3 cut(s) 35, 134, 593
Hpy8I GTNNAC 2 cut(s) 102, 104
HpyAV CCTTC 1 cut(s) 571
HpyCH4IV ACGT 1 cut(s) 585
HpyF10VI GCNNNNNNNGC 4 cut(s) 265, 438, 461, 643
HpyF3I CTNAG 3 cut(s) 132, 351, 638
HpySE526I ACGT 1 cut(s) 585
HspAI GCGC 2 cut(s) 281, 347
Kzo9I GATC 3 cut(s) 31, 589, 624
LguI GCTCTTC 1 cut(s) 132
Lsp1109I GCAGC 1 cut(s) 473
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 3 cut(s) 4, 290, 405
MalI GATC 3 cut(s) 33, 591, 626
MboI GATC 3 cut(s) 31, 589, 624
MboII GAAGA 7 cut(s) 87, 90, 149, 416, 427, 437, 593
MflI RGATCY 2 cut(s) 31, 624
MhlI GDGCHC 1 cut(s) 443
MlsI TGGCCA 1 cut(s) 481
MluNI TGGCCA 1 cut(s) 481
MlyI GAGTC 3 cut(s) 137, 468, 487
Mox20I TGGCCA 1 cut(s) 481
MscI TGGCCA 1 cut(s) 481
MseI TTAA 2 cut(s) 159, 632
Msp20I TGGCCA 1 cut(s) 481
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 2 cut(s) 471, 483
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 2 cut(s) 471, 483
MwoI GCNNNNNNNGC 4 cut(s) 265, 438, 461, 643
NdeII GATC 3 cut(s) 31, 589, 624
NheI GCTAGC 1 cut(s) 88
NmuCI GTSAC 2 cut(s) 290, 405
PciSI GCTCTTC 1 cut(s) 132
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 3 cut(s) 136, 468, 487
PpsI GAGTC 3 cut(s) 136, 468, 487
Psp6I CCWGG 2 cut(s) 469, 481
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 2 cut(s) 51, 436
PspGI CCWGG 2 cut(s) 469, 481
PspPI GGNCC 1 cut(s) 518
PsuI RGATCY 2 cut(s) 31, 624
RsaI GTAC 3 cut(s) 103, 198, 514
RsaNI GTAC 3 cut(s) 102, 197, 513
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 159, 632
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 3 cut(s) 31, 589, 624
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 3 cut(s) 137, 468, 487
ScrFI CCNGG 2 cut(s) 471, 483
SduI GDGCHC 1 cut(s) 443
SfaNI GCATC 1 cut(s) 298
SsiI CCGC 2 cut(s) 497, 536
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 469, 481
TaiI ACGT 1 cut(s) 588
TaqI TCGA 1 cut(s) 592
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 2 cut(s) 159, 632
Tru9I TTAA 2 cut(s) 159, 632
TscAI CASTG 1 cut(s) 434
TseFI GTSAC 2 cut(s) 290, 405
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 2 cut(s) 290, 405
TspDTI ATGAA 2 cut(s) 366, 626
TspRI CASTG 1 cut(s) 434
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.