RchiOBHm_Chr4g0436571

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000380
Physical Location & Seq
Forward (+)
59844646 .. 59846782
2137 bp
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UTR
Exon/CDS
Intron
PRQ40489

Sequence Viewer

Length: 405 bp
ATGAAGAGGATCTTGTTGAAAGGCCGTTCAAGAAGAAACAGATCAAGATCAGGTTTCCTGAATGGGGAAGAAGTGGGAGATTTGCTCCATTTGGAGGTGTTGTTTAGCAGAACAAATCTCACAATTGAAAAAGGAGAGAAACTGGCCATTATTGGCCCAAATGGATGTGGCAAGAGTACTTTACTGAAACTAATAATGGGTTTACAAAAGCCAATAGCAGGTGAAGTTCTGCTTGGGGAGCATAATGTCCTAACAAACTTTTTTGAGCAAAATCAGTGGGAGAGGAGAGGCAGCAGCCAACCCAAGCAGATATTGATCAAGTGCGAAATGAGTGGGGGAAGTTTGTTGTCAACACATATGTGCATGAACCTTGAAGTAGCGCGCTTGTTGCTGGTACAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

134

Amino Acids

15.03

Weight (kDa)

9.78

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 37 - 90 2.1e-15 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 209
AccII CGCG 1 cut(s) 382
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 144
AfaI GTAC 2 cut(s) 178, 396
AfiI CCNNNNNNNGG 3 cut(s) 64, 94, 218
AgsI TTSAA 4 cut(s) 19, 30, 128, 374
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AleI CACNNNNGTG 1 cut(s) 358
AlwI GGATC 1 cut(s) 17
AoxI GGCC 3 cut(s) 22, 144, 154
ApeKI GCWGC 2 cut(s) 291, 294
AspLEI GCGC 2 cut(s) 382, 384
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 233
BalI TGGCCA 1 cut(s) 146
BbvI GCAGC 2 cut(s) 303, 306
BceAI ACGGC 1 cut(s) 9
BclI TGATCA 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 209
BisI GCNGC 2 cut(s) 292, 295
BlsI GCNGC 2 cut(s) 293, 296
BmcAI AGTACT 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BsaBI GATNNNNATC 2 cut(s) 46, 314
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 94, 218
Bse1I ACTGG 1 cut(s) 147
Bse8I GATNNNNATC 2 cut(s) 46, 314
BseGI GGATG 1 cut(s) 170
BseJI GATNNNNATC 2 cut(s) 46, 314
BseLI CCNNNNNNNGG 3 cut(s) 64, 94, 218
BseNI ACTGG 1 cut(s) 147
BsePI GCGCGC 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 298
BseXI GCAGC 2 cut(s) 303, 306
Bsh1236I CGCG 1 cut(s) 382
BshFI GGCC 3 cut(s) 24, 146, 156
BslI CCNNNNNNNGG 3 cut(s) 64, 94, 218
BsnI GGCC 3 cut(s) 24, 146, 156
Bsp143I GATC 4 cut(s) 9, 41, 47, 315
BspANI GGCC 3 cut(s) 24, 146, 156
BspFNI CGCG 1 cut(s) 382
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 147
BssHII GCGCGC 1 cut(s) 380
BssMI GATC 4 cut(s) 9, 41, 47, 315
BstC8I GCNNGC 1 cut(s) 382
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 382
BstHHI GCGC 2 cut(s) 382, 384
BstKTI GATC 4 cut(s) 12, 44, 50, 318
BstMBI GATC 4 cut(s) 9, 41, 47, 315
BstMWI GCNNNNNNNGC 2 cut(s) 238, 388
BstUI CGCG 1 cut(s) 382
BstV1I GCAGC 2 cut(s) 303, 306
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 3 cut(s) 24, 146, 156
BtsCI GGATG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 281
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 382
CfoI GCGC 2 cut(s) 382, 384
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 177, 395
CspCI CAANNNNNGTGG 2 cut(s) 257, 292
CviAII CATG 1 cut(s) 364
CviJI RGCY 5 cut(s) 24, 146, 156, 211, 297
CviKI_1 RGCY 5 cut(s) 24, 146, 156, 211, 297
CviQI GTAC 2 cut(s) 177, 395
DpnI GATC 4 cut(s) 11, 43, 49, 317
DpnII GATC 4 cut(s) 9, 41, 47, 315
EaeI YGGCCR 1 cut(s) 144
FaeI CATG 1 cut(s) 367
FaiI YATR 4 cut(s) 243, 357, 359, 365
FalI AAGNNNNNCTT 3 cut(s) 28, 216, 248
FatI CATG 1 cut(s) 363
FauNDI CATATG 1 cut(s) 357
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 292, 295
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 2 cut(s) 292, 295
GlaI GCGC 2 cut(s) 381, 383
GluI GCNGC 2 cut(s) 292, 295
HaeIII GGCC 3 cut(s) 24, 146, 156
HhaI GCGC 2 cut(s) 382, 384
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 2 cut(s) 380, 382
HinP1I GCGC 2 cut(s) 380, 382
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 2 cut(s) 203, 351
Hpy188III TCNNGA 3 cut(s) 30, 45, 58
Hpy8I GTNNAC 2 cut(s) 203, 351
HpyCH4V TGCA 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 388
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 2 cut(s) 380, 382
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 4 cut(s) 9, 41, 47, 315
LmnI GCTCC 2 cut(s) 90, 238
LpnPI CCDG 5 cut(s) 36, 71, 128, 204, 377
Lsp1109I GCAGC 2 cut(s) 303, 306
MalI GATC 4 cut(s) 11, 43, 49, 317
MboI GATC 4 cut(s) 9, 41, 47, 315
MboII GAAGA 3 cut(s) 16, 45, 80
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 2 cut(s) 123, 398
MluNI TGGCCA 1 cut(s) 146
MnlI CCTC 3 cut(s) 88, 276, 281
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 358
Msp20I TGGCCA 1 cut(s) 146
MunI CAATTG 1 cut(s) 123
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 238, 388
NdeI CATATG 1 cut(s) 357
NdeII GATC 4 cut(s) 9, 41, 47, 315
NlaIII CATG 1 cut(s) 367
OliI CACNNNNGTG 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 209
PauI GCGCGC 1 cut(s) 380
PkrI GCNGC 2 cut(s) 293, 296
PspPI GGNCC 1 cut(s) 155
PsuI RGATCY 1 cut(s) 9
PteI GCGCGC 1 cut(s) 380
RsaI GTAC 2 cut(s) 178, 396
RsaNI GTAC 2 cut(s) 177, 395
RseI CAYNNNNRTG 1 cut(s) 358
SatI GCNGC 2 cut(s) 292, 295
Sau3AI GATC 4 cut(s) 9, 41, 47, 315
Sau96I GGNCC 1 cut(s) 155
ScaI AGTACT 1 cut(s) 178
SetI ASST 4 cut(s) 55, 99, 223, 372
SmiMI CAYNNNNRTG 1 cut(s) 358
Sse9I AATT 2 cut(s) 123, 398
TasI AATT 2 cut(s) 123, 398
TatI WGTACW 1 cut(s) 176
TscAI CASTG 1 cut(s) 281
TseI GCWGC 2 cut(s) 291, 294
TspDTI ATGAA 2 cut(s) 17, 380
TspRI CASTG 1 cut(s) 281
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.