RLG00000013376

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000380
Physical Location & Seq
Forward (+)
30546222 .. 30547879
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013376

Sequence Viewer

Length: 465 bp
ATGGACGTGGAAAGCATCGCTTTCTTTGCTGTCCAAGAACACAACAAGCGACAGAATGGTGTGCTTGAGTTTGCGAGGGTGCTGAATTCAAGGGAACAAGATGATGGCGAACTCTCAATTGGTGAAAATATGATAGCTGCTGCTGGAGCTGCCACAACCATTTCAACAATTCCATTGTGGGTTGTTAAGACAAAACTGCAATCTAAGATGGATGCATTGGCCAACCAGACTCGGGTGGATCAAATTACACAACGGCTGAAAATTGGAATATCAGAGTTTGGAAACAATGAGAACGTGTCATCAGCACCTCAGGATCCAAACCATGTATCCTCTACATATCAGGTTGACAAGGAGGGTGCAAAGCAATTGGAACTGGAAAAGCGGGAAGCCATAGGTGTGCTTGATGGCTGTCTCAGATTATACCTTCCTGGTTCTTATGTTATGCCTTGGTTGATTAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 SF1-HH

Protein Analysis

155

Amino Acids

17.09

Weight (kDa)

5.21

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 382
AclWI GGATC 3 cut(s) 246, 308, 321
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 232
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 2 cut(s) 90, 165
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 1 cut(s) 427
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AluBI AGCT 2 cut(s) 137, 149
AluI AGCT 2 cut(s) 137, 149
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 3 cut(s) 246, 308, 321
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 3 cut(s) 137, 140, 149
ApoI RAATTY 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 231
AxyI CCTNAGG 1 cut(s) 309
BalI TGGCCA 1 cut(s) 221
BamHI GGATCC 1 cut(s) 313
BbvI GCAGC 3 cut(s) 124, 127, 136
BccI CCATC 3 cut(s) 98, 202, 398
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 429
BciVI GTATCC 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 416
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 3 cut(s) 138, 141, 150
BlsI GCNGC 3 cut(s) 139, 142, 151
Bme1390I CCNGG 1 cut(s) 429
BmeT110I CYCGRG 1 cut(s) 231
BmgBI CACGTC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 2 cut(s) 24, 202
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 446
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 378
Bse21I CCTNAGG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 323, 427
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 3 cut(s) 124, 127, 136
BshFI GGCC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 416
BsnI GGCC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 231
Bsp143I GATC 2 cut(s) 238, 313
BspACI CCGC 1 cut(s) 382
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 322, 426
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 3 cut(s) 246, 308, 321
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 1 cut(s) 446
BssMI GATC 2 cut(s) 238, 313
BssT1I CCWWGG 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 429
BstDEI CTNAG 3 cut(s) 204, 309, 413
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 2 cut(s) 241, 316
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 2 cut(s) 238, 313
BstMWI GCNNNNNNNGC 3 cut(s) 26, 146, 149
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 427
BstV1I GCAGC 3 cut(s) 124, 127, 136
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
Bsu36I CCTNAGG 1 cut(s) 309
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 1 cut(s) 221
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 217
CviAII CATG 1 cut(s) 323
CviJI RGCY 6 cut(s) 137, 149, 221, 256, 389, 408
CviKI_1 RGCY 6 cut(s) 137, 149, 221, 256, 389, 408
DdeI CTNAG 3 cut(s) 204, 309, 413
DpnI GATC 2 cut(s) 240, 315
DpnII GATC 2 cut(s) 238, 313
EaeI YGGCCR 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 446
Eco81I CCTNAGG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 446
EcoT22I ATGCAT 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 1 cut(s) 326
FaiI YATR 7 cut(s) 131, 324, 337, 392, 421, 438, 443
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 1 cut(s) 322
FauI CCCGC 1 cut(s) 375
Fnu4HI GCNGC 3 cut(s) 138, 141, 150
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 3 cut(s) 138, 141, 150
GluI GCNGC 3 cut(s) 138, 141, 150
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 221
Hin1II CATG 1 cut(s) 326
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 1 cut(s) 229
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 274, 416
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 1 cut(s) 434
HpyCH4IV ACGT 2 cut(s) 6, 294
HpyCH4V TGCA 3 cut(s) 199, 215, 359
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 146, 149
HpyF3I CTNAG 3 cut(s) 204, 309, 413
HpySE526I ACGT 2 cut(s) 6, 294
Hsp92II CATG 1 cut(s) 326
Kzo9I GATC 2 cut(s) 238, 313
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 7 cut(s) 129, 239, 296, 326, 359, 414, 441
Lsp1109I GCAGC 3 cut(s) 124, 127, 136
LweI GCATC 2 cut(s) 24, 202
MaeII ACGT 2 cut(s) 6, 294
MalI GATC 2 cut(s) 240, 315
MboI GATC 2 cut(s) 238, 313
MfeI CAATTG 2 cut(s) 117, 365
MflI RGATCY 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 6 cut(s) 85, 117, 168, 243, 261, 365
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 4 cut(s) 69, 318, 340, 346
Mox20I TGGCCA 1 cut(s) 221
Mph1103I ATGCAT 1 cut(s) 217
MscI TGGCCA 1 cut(s) 221
MseI TTAA 2 cut(s) 186, 456
MslI CAYNNNNRTG 1 cut(s) 395
Msp20I TGGCCA 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 429
MunI CAATTG 2 cut(s) 117, 365
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 3 cut(s) 26, 146, 149
NdeII GATC 2 cut(s) 238, 313
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 1 cut(s) 315
NsiI ATGCAT 1 cut(s) 217
PkrI GCNGC 3 cut(s) 139, 142, 151
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 315
PsuI RGATCY 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 2 cut(s) 186, 456
SatI GCNGC 3 cut(s) 138, 141, 150
Sau3AI GATC 2 cut(s) 238, 313
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 429
SetI ASST 8 cut(s) 9, 139, 151, 297, 310, 345, 397, 426
SfaNI GCATC 2 cut(s) 24, 202
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 6 cut(s) 85, 117, 168, 243, 261, 365
SsiI CCGC 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 446
TaiI ACGT 2 cut(s) 9, 297
TasI AATT 6 cut(s) 85, 117, 168, 243, 261, 365
Tru1I TTAA 2 cut(s) 186, 456
Tru9I TTAA 2 cut(s) 186, 456
TseI GCWGC 3 cut(s) 137, 140, 149
XapI RAATTY 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.