Rh6DG116900

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000380
Physical Location & Seq
Forward (+)
15491943 .. 15503297
11355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG116900.1

Sequence Viewer

Length: 1377 bp
ATGGACAGGGAGAGTAGTAAGCCGAAGAAAGAAGTTGGAGGTAGGAGCTTGATTGATTTGGTTTTCTCTTGGTCTATTACAGATGTTCTCAATAAAGATCACTACAAAAACCAGGTAACTACGATTCCTGAGACGTTCTCGACCGTAACGAGTTACATGAAAGCATTTGTTCCTTCACTTCTTGAGGAAACACATGATGAATTACGCTCAAGCATGATGTCCCTGTCGCGGGCACCAACTTGTGAAATTCTAACAGTTGAAACTTCCAAGGATCATAAACCTCCCAAAGACTTGTTTTACCAAATTACATATAAGAGGAGACAAGGAGAAGATTATGTAGGAGCATATGAGCCAGATGTTGGTGATGTCATTGCTTTGACCAATGTGAGACCAAAATACATTGATGATCTGAATAGATCCAGAAATTCTTATCTTATTGCTTATGTTATTGGATCACAACACGGAAGTTCTGATAAGCTTCCGATACTCGCATCAAAGTCTATCAATGGAGGAGGAGAGTCAGGAAACAAAAAGATTAAGAGCAAGAGTGATACGCTTTTTGCTGTTTACCTCATGAACATGACAACAAACGTACGTGTATGGAAAGCTCTGAACTCAGAATTAGGCTCAAACACAAATCTGTTTAAGAATGTTCTGCGGGTGCAACCTCCAAATTCATCACATTTTGTGCAGGAGAGACAGTACTCACTGTATTTGAAAAAGAGAAGCGAAAAGTACAATGATGATGGTAAAGACAGTGATAATAGGAACTCATCCAGTGATGGTCACAATGGTTTTTTGACATTTGAGGAGTTTGTGAAGGAGAAACAGAATTTCATTGGTAAGAATCTGAAGCTGTGTATGGTTTACTTTGCCAATGAATTTAACCACTCCATTGCAAAAATTAAAGACCCCAAGATTCGTCGGGATGTGGTGTTGTTCAACAACAACCACAAGGGTGCGGTGTCTCCGCCTCAGGTGTCATTTAAGTCTCAGTACCTCTCCATTCACTACAACTTTGAAGATCAGTCTACCCTCCCCAACAGCTCCGTCGATGTTGGTCCCATATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGGCAACTATGGTTGCGAAGCTTGCTGACCCTGGATATGCATTTCAACTCTCTTCTTCTTTCCATTCTGTTGGTTTGAGTCTATCATATGAAGTGTTTTCCTATTTCAAAACAACCATTACTTCTTCCTCACCAGCTCATCCAGAATTCATATTTCTGCAAGAACCAGAGGATGGTGGCAAACTCTCAATTGGTGAAAATATGATAGATGCTGCTGGGACTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

458

Amino Acids

51.42

Weight (kDa)

8.2

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 89 - 205 1.1e-09 Domain of unknown function (DUF6469)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AccB7I CCANNNNNTGG 2 cut(s) 359, 1283
AccI GTMKAC 1 cut(s) 1031
AccII CGCG 1 cut(s) 229
AciI CCGC 4 cut(s) 229, 658, 962, 971
AclWI GGATC 3 cut(s) 279, 411, 460
AcsI RAATTY 6 cut(s) 246, 424, 673, 832, 881, 1256
AcuI CTGAAG 1 cut(s) 872
AfaI GTAC 4 cut(s) 594, 704, 737, 998
AfiI CCNNNNNNNGG 4 cut(s) 228, 229, 359, 1283
AflIII ACRYGT 1 cut(s) 595
AgsI TTSAA 7 cut(s) 260, 718, 943, 1022, 1157, 1219, 1347
AjnI CCWGG 2 cut(s) 111, 1141
AleI CACNNNNGTG 1 cut(s) 957
AluBI AGCT 8 cut(s) 48, 478, 608, 856, 1047, 1132, 1247, 1372
AluI AGCT 8 cut(s) 48, 478, 608, 856, 1047, 1132, 1247, 1372
Alw26I GTCTC 6 cut(s) 125, 313, 382, 691, 972, 996
AlwI GGATC 3 cut(s) 279, 411, 460
ApeKI GCWGC 1 cut(s) 1322
ApoI RAATTY 6 cut(s) 246, 424, 673, 832, 881, 1256
AspS9I GGNCC 1 cut(s) 1061
AsuHPI GGTGA 3 cut(s) 374, 1233, 1316
AvaII GGWCC 1 cut(s) 1061
AxyI CCTNAGG 1 cut(s) 975
BaeGI GKGCMC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 1309
BccI CCATC 3 cut(s) 740, 776, 1277
BciT130I CCWGG 2 cut(s) 113, 1143
BcoDI GTCTC 6 cut(s) 125, 313, 382, 691, 972, 996
BisI GCNGC 1 cut(s) 1323
BlsI GCNGC 1 cut(s) 1324
BmcAI AGTACT 1 cut(s) 704
Bme1390I CCNGG 2 cut(s) 113, 1143
Bme18I GGWCC 1 cut(s) 1061
BmgT120I GGNCC 1 cut(s) 1061
BmiI GGNNCC 2 cut(s) 234, 1063
BmrFI CCNGG 2 cut(s) 113, 1143
BmsI GCATC 2 cut(s) 500, 1309
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpuEI CTTGAG 3 cut(s) 193, 203, 1079
BsaAI YACGTR 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 267, 1141
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bsc4I CCNNNNNNNGG 4 cut(s) 228, 229, 359, 1283
Bse1I ACTGG 1 cut(s) 777
Bse21I CCTNAGG 1 cut(s) 975
Bse3DI GCAATG 2 cut(s) 369, 894
BseBI CCWGG 2 cut(s) 113, 1143
BseDI CCNNGG 2 cut(s) 267, 1141
BseGI GGATG 4 cut(s) 773, 934, 1249, 1288
BseLI CCNNNNNNNGG 4 cut(s) 228, 229, 359, 1283
BseMI GCAATG 2 cut(s) 369, 894
BseMII CTCAG 4 cut(s) 120, 630, 989, 1007
BseNI ACTGG 1 cut(s) 777
BseRI GAGGAG 4 cut(s) 331, 525, 528, 824
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 1 cut(s) 1309
BseYI CCCAGC 1 cut(s) 1325
BsgI GTGCAG 1 cut(s) 710
Bsh1236I CGCG 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 144
BsiWI CGTACG 1 cut(s) 592
BslFI GGGAC 3 cut(s) 205, 1047, 1342
BslI CCNNNNNNNGG 4 cut(s) 228, 229, 359, 1283
BsmAI GTCTC 6 cut(s) 125, 313, 382, 691, 972, 996
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 3 cut(s) 205, 1047, 1342
Bso31I GGTCTC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 7 cut(s) 97, 271, 406, 416, 452, 1024, 1090
BspACI CCGC 4 cut(s) 229, 658, 962, 971
BspCNI CTCAG 4 cut(s) 121, 629, 988, 1006
BspFNI CGCG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 2 cut(s) 234, 1063
BspPI GGATC 3 cut(s) 279, 411, 460
BspT107I GGYRCC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 382
BsrDI GCAATG 2 cut(s) 369, 894
BsrI ACTGG 1 cut(s) 777
BssECI CCNNGG 2 cut(s) 267, 1141
BssMI GATC 7 cut(s) 97, 271, 406, 416, 452, 1024, 1090
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 113, 1143
Bst4CI ACNGT 5 cut(s) 145, 256, 702, 711, 758
Bst6I CTCTTC 1 cut(s) 1168
BstBAI YACGTR 1 cut(s) 596
BstC8I GCNNGC 2 cut(s) 231, 1134
BstDEI CTNAG 4 cut(s) 129, 616, 975, 993
BstF5I GGATG 4 cut(s) 773, 934, 1249, 1288
BstFNI CGCG 1 cut(s) 229
BstKTI GATC 7 cut(s) 100, 274, 409, 419, 455, 1027, 1093
BstMAI GTCTC 6 cut(s) 125, 313, 382, 691, 972, 996
BstMBI GATC 7 cut(s) 97, 271, 406, 416, 452, 1024, 1090
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 1133, 1331
BstNI CCWGG 2 cut(s) 113, 1143
BstSCI CCNGG 2 cut(s) 111, 1141
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 1309
BstX2I RGATCY 1 cut(s) 416
BstXI CCANNNNNNTGG 1 cut(s) 1181
BstYI RGATCY 1 cut(s) 416
Bsu36I CCTNAGG 1 cut(s) 975
BtsCI GGATG 4 cut(s) 773, 934, 1249, 1288
BtsIMutI CAGTG 3 cut(s) 707, 763, 784
Cac8I GCNNGC 2 cut(s) 231, 1134
CciI TCATGA 1 cut(s) 573
Cfr13I GGNCC 1 cut(s) 1061
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 4 cut(s) 593, 703, 736, 997
CviAII CATG 6 cut(s) 157, 194, 214, 574, 580, 1088
CviQI GTAC 4 cut(s) 593, 703, 736, 997
DdeI CTNAG 4 cut(s) 129, 616, 975, 993
DpnI GATC 7 cut(s) 99, 273, 408, 418, 454, 1026, 1092
DpnII GATC 7 cut(s) 97, 271, 406, 416, 452, 1024, 1090
Eam1104I CTCTTC 1 cut(s) 1168
EarI CTCTTC 1 cut(s) 1168
EciI GGCGGA 1 cut(s) 960
Eco130I CCWWGG 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 1061
Eco57I CTGAAG 1 cut(s) 872
Eco81I CCTNAGG 1 cut(s) 975
EcoRI GAATTC 1 cut(s) 1256
EcoRII CCWGG 2 cut(s) 111, 1141
EcoT14I CCWWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 1153
ErhI CCWWGG 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 6 cut(s) 160, 197, 217, 577, 583, 1091
FaqI GGGAC 3 cut(s) 205, 1047, 1342
FatI CATG 6 cut(s) 156, 193, 213, 573, 579, 1087
FauI CCCGC 2 cut(s) 222, 651
FauNDI CATATG 2 cut(s) 346, 1198
FblI GTMKAC 1 cut(s) 1031
Fnu4HI GCNGC 1 cut(s) 1323
FokI GGATG 4 cut(s) 760, 941, 1236, 1295
Fsp4HI GCNGC 1 cut(s) 1323
GluI GCNGC 1 cut(s) 1323
GsaI CCCAGC 1 cut(s) 1329
Hin1II CATG 6 cut(s) 160, 197, 217, 577, 583, 1091
HindIII AAGCTT 2 cut(s) 476, 1130
HinfI GANTC 5 cut(s) 124, 518, 847, 919, 1189
HphI GGTGA 3 cut(s) 374, 1233, 1316
Hpy166II GTNNAC 3 cut(s) 568, 868, 1032
Hpy188I TCNGA 7 cut(s) 411, 472, 483, 612, 619, 852, 1376
Hpy188III TCNNGA 8 cut(s) 128, 139, 182, 420, 522, 574, 926, 1253
Hpy8I GTNNAC 3 cut(s) 568, 868, 1032
Hpy99I CGWCG 2 cut(s) 927, 1055
HpyAV CCTTC 2 cut(s) 183, 814
HpyCH4III ACNGT 5 cut(s) 145, 256, 702, 711, 758
HpyCH4IV ACGT 3 cut(s) 134, 591, 595
HpyCH4V TGCA 6 cut(s) 664, 691, 899, 1072, 1151, 1270
HpyF10VI GCNNNNNNNGC 2 cut(s) 1133, 1331
HpyF3I CTNAG 4 cut(s) 129, 616, 975, 993
HpySE526I ACGT 3 cut(s) 134, 591, 595
Hsp92II CATG 6 cut(s) 160, 197, 217, 577, 583, 1091
Kzo9I GATC 7 cut(s) 97, 271, 406, 416, 452, 1024, 1090
LmnI GCTCC 3 cut(s) 45, 341, 1052
Lsp1109I GCAGC 1 cut(s) 1309
LweI GCATC 2 cut(s) 500, 1309
MabI ACCWGGT 1 cut(s) 111
MaeII ACGT 3 cut(s) 134, 591, 595
MaeIII GTNAC 4 cut(s) 115, 145, 152, 785
MalI GATC 7 cut(s) 99, 273, 408, 418, 454, 1026, 1092
MboI GATC 7 cut(s) 97, 271, 406, 416, 452, 1024, 1090
MboII GAAGA 6 cut(s) 37, 341, 1034, 1155, 1158, 1227
MfeI CAATTG 1 cut(s) 1299
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 235
MlyI GAGTC 2 cut(s) 527, 1198
MmeI TCCRAC 1 cut(s) 16
Mph1103I ATGCAT 1 cut(s) 1153
MseI TTAA 6 cut(s) 537, 645, 885, 906, 987, 1368
MslI CAYNNNNRTG 2 cut(s) 578, 957
MspR9I CCNGG 2 cut(s) 113, 1143
MunI CAATTG 1 cut(s) 1299
MvaI CCWGG 2 cut(s) 113, 1143
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 1133, 1331
NdeI CATATG 2 cut(s) 346, 1198
NdeII GATC 7 cut(s) 97, 271, 406, 416, 452, 1024, 1090
NlaIII CATG 6 cut(s) 160, 197, 217, 577, 583, 1091
NlaIV GGNNCC 2 cut(s) 234, 1063
NmuCI GTSAC 1 cut(s) 785
NsiI ATGCAT 1 cut(s) 1153
OliI CACNNNNGTG 1 cut(s) 957
PagI TCATGA 1 cut(s) 573
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PfeI GAWTC 3 cut(s) 124, 847, 919
Pfl23II CGTACG 1 cut(s) 592
PflMI CCANNNNNTGG 2 cut(s) 359, 1283
PkrI GCNGC 1 cut(s) 1324
PleI GAGTC 2 cut(s) 526, 1197
PpsI GAGTC 2 cut(s) 526, 1197
Ppu21I YACGTR 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 111, 1141
PspFI CCCAGC 1 cut(s) 1325
PspGI CCWGG 2 cut(s) 111, 1141
PspLI CGTACG 1 cut(s) 592
PspN4I GGNNCC 2 cut(s) 234, 1063
PspPI GGNCC 1 cut(s) 1061
PsuI RGATCY 1 cut(s) 416
RsaI GTAC 4 cut(s) 594, 704, 737, 998
RsaNI GTAC 4 cut(s) 593, 703, 736, 997
RseI CAYNNNNRTG 2 cut(s) 578, 957
SaqAI TTAA 6 cut(s) 537, 645, 885, 906, 987, 1368
SatI GCNGC 1 cut(s) 1323
Sau3AI GATC 7 cut(s) 97, 271, 406, 416, 452, 1024, 1090
Sau96I GGNCC 1 cut(s) 1061
ScaI AGTACT 1 cut(s) 704
SchI GAGTC 2 cut(s) 527, 1198
ScrFI CCNGG 2 cut(s) 113, 1143
SduI GDGCHC 1 cut(s) 235
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 2 cut(s) 500, 1309
SinI GGWCC 1 cut(s) 1061
SmiMI CAYNNNNRTG 2 cut(s) 578, 957
SmlI CTYRAG 3 cut(s) 182, 208, 1094
SmoI CTYRAG 3 cut(s) 182, 208, 1094
SsiI CCGC 4 cut(s) 229, 658, 962, 971
StyD4I CCNGG 2 cut(s) 111, 1141
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 5 cut(s) 145, 256, 702, 711, 758
TaiI ACGT 3 cut(s) 137, 594, 598
TaqI TCGA 2 cut(s) 140, 1053
TatI WGTACW 2 cut(s) 702, 735
TfiI GAWTC 3 cut(s) 124, 847, 919
Tru1I TTAA 6 cut(s) 537, 645, 885, 906, 987, 1368
Tru9I TTAA 6 cut(s) 537, 645, 885, 906, 987, 1368
TscAI CASTG 3 cut(s) 714, 763, 784
TseFI GTSAC 1 cut(s) 785
TseI GCWGC 1 cut(s) 1322
Tsp45I GTSAC 1 cut(s) 785
TspDTI ATGAA 8 cut(s) 173, 213, 590, 666, 826, 894, 1215, 1249
TspGWI ACGGA 3 cut(s) 477, 1039, 1067
TspRI CASTG 3 cut(s) 714, 763, 784
Van91I CCANNNNNTGG 2 cut(s) 359, 1283
VpaK11BI GGWCC 1 cut(s) 1061
XapI RAATTY 6 cut(s) 246, 424, 673, 832, 881, 1256
XmiI GTMKAC 1 cut(s) 1031
ZrmI AGTACT 1 cut(s) 704
Zsp2I ATGCAT 1 cut(s) 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.