Rh6DG391500

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000380
Physical Location & Seq
Reverse (-)
58381303 .. 58385326
4024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG391500.1

Sequence Viewer

Length: 318 bp
ATGAAGAATGGTGTGCTTGAGTTTGCGAGGGTGTTGAATTCAAGGGAACAAGTGGATACTTGGGTGGATCAAATTACACAACTACTGAAATCTGGAATATCAGAGTTTGGAAACAATGAGAACGTGTCATCAGCACCTCAGGATCCAGACCACATGTCCTCTACATATCAAGTTGAGAAGGAGGGTGCAGAACAATTGGAACTGGAAAAGCGGGAAGCCATAGGTGTGCTTGATGGCTGTCTCAGATTATACCTTCCTGGTAACCAGGTGTTGAAAGTATCTCACTGGTACAAAGGTTTTCAGGAAATGAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 SF1-HH

Protein Analysis

105

Amino Acids

11.92

Weight (kDa)

4.96

Isoelectric Point (pI)

22.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 211
AclWI GGATC 3 cut(s) 75, 137, 150
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 1 cut(s) 290
AflIII ACRYGT 2 cut(s) 123, 153
AgsI TTSAA 3 cut(s) 37, 42, 274
AhdI GACNNNNNGTC 1 cut(s) 154
AjnI CCWGG 2 cut(s) 256, 264
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 3 cut(s) 75, 137, 150
ApoI RAATTY 1 cut(s) 37
AxyI CCTNAGG 1 cut(s) 138
BaeI ACNNNNGTAYC 4 cut(s) 48, 81, 280, 313
BamHI GGATCC 1 cut(s) 142
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 2 cut(s) 258, 266
BciVI GTATCC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 316
BfuI GTATCC 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 258, 266
BmeRI GACNNNNNGTC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 258, 266
BpuEI CTTGAG 1 cut(s) 38
Bse1I ACTGG 2 cut(s) 207, 290
Bse21I CCTNAGG 1 cut(s) 138
BseBI CCWGG 2 cut(s) 258, 266
BseMII CTCAG 2 cut(s) 152, 256
BseNI ACTGG 2 cut(s) 207, 290
BsgI GTGCAG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 67, 142
BspACI CCGC 1 cut(s) 211
BspCNI CTCAG 2 cut(s) 151, 255
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 3 cut(s) 75, 137, 150
BspQI GCTCTTC 1 cut(s) 305
BsrI ACTGG 2 cut(s) 207, 290
BssMI GATC 2 cut(s) 67, 142
Bst2UI CCWGG 2 cut(s) 258, 266
Bst6I CTCTTC 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 138, 242
BstEII GGTNACC 1 cut(s) 260
BstKTI GATC 2 cut(s) 70, 145
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 2 cut(s) 67, 142
BstNI CCWGG 2 cut(s) 258, 266
BstNSI RCATGY 1 cut(s) 157
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 256, 264
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
Bsu36I CCTNAGG 1 cut(s) 138
BsuI GTATCC 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 283
CsiI ACCWGGT 1 cut(s) 264
Csp6I GTAC 1 cut(s) 289
CviAII CATG 1 cut(s) 154
CviJI RGCY 3 cut(s) 218, 237, 315
CviKI_1 RGCY 3 cut(s) 218, 237, 315
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 138, 242
DpnI GATC 2 cut(s) 69, 144
DpnII GATC 2 cut(s) 67, 142
DriI GACNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 305
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 305
Eco81I CCTNAGG 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 260
EcoO65I GGTNACC 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 256, 264
FaeI CATG 1 cut(s) 157
FaiI YATR 4 cut(s) 155, 166, 221, 250
FatI CATG 1 cut(s) 153
FauI CCCGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 316
Hin1II CATG 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 103, 245
Hpy188III TCNNGA 4 cut(s) 93, 140, 146, 302
HpyAV CCTTC 2 cut(s) 172, 263
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 188
HpyF3I CTNAG 2 cut(s) 138, 242
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 2 cut(s) 67, 142
LguI GCTCTTC 1 cut(s) 305
MabI ACCWGGT 1 cut(s) 264
MaeI CTAG 1 cut(s) 316
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 260
MalI GATC 2 cut(s) 69, 144
MboI GATC 2 cut(s) 67, 142
MboII GAAGA 1 cut(s) 16
MfeI CAATTG 1 cut(s) 194
MflI RGATCY 1 cut(s) 142
MluCI AATT 3 cut(s) 37, 72, 194
MnlI CCTC 4 cut(s) 21, 147, 169, 175
MslI CAYNNNNRTG 1 cut(s) 224
MspR9I CCNGG 2 cut(s) 258, 266
MunI CAATTG 1 cut(s) 194
MvaI CCWGG 2 cut(s) 258, 266
NdeII GATC 2 cut(s) 67, 142
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 144
NspI RCATGY 1 cut(s) 157
PciI ACATGT 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 305
PscI ACATGT 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 256, 264
PspEI GGTNACC 1 cut(s) 260
PspGI CCWGG 2 cut(s) 256, 264
PspN4I GGNNCC 1 cut(s) 144
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 305
Sau3AI GATC 2 cut(s) 67, 142
ScrFI CCNGG 2 cut(s) 258, 266
SetI ASST 7 cut(s) 126, 139, 226, 255, 270, 298, 317
SexAI ACCWGGT 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 3 cut(s) 37, 72, 194
SsiI CCGC 1 cut(s) 211
SspMI CTAG 1 cut(s) 316
StyD4I CCNGG 2 cut(s) 256, 264
TaiI ACGT 1 cut(s) 126
TasI AATT 3 cut(s) 37, 72, 194
TscAI CASTG 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 290
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 157
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.